Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400082019 | Potato | cytosol | 97.04 | 97.04 |
| VIT_06s0004g01360.t01 | Wine grape | cytosol | 82.06 | 81.77 |
| HORVU7Hr1G046290.3 | Barley | cytosol | 75.09 | 79.67 |
| GSMUA_Achr3P11720_001 | Banana | cytosol | 78.75 | 79.3 |
| Solyc12g100200.1.1 | Tomato | plastid | 82.93 | 77.02 |
| GSMUA_Achr7P06390_001 | Banana | cytosol | 72.47 | 76.89 |
| Bra006176.1-P | Field mustard | cytosol | 75.61 | 75.74 |
| KRG93074 | Soybean | nucleus | 76.66 | 74.58 |
| TraesCS7D01G227400.2 | Wheat | mitochondrion | 76.13 | 70.71 |
| TraesCS7A01G227000.1 | Wheat | mitochondrion | 75.96 | 70.55 |
| TraesCS7B01G192600.1 | Wheat | mitochondrion | 75.61 | 70.23 |
| CDX78502 | Canola | plastid | 75.78 | 70.16 |
| Os06t0320700-01 | Rice | plasma membrane | 76.48 | 70.13 |
| CDX97219 | Canola | plastid | 77.87 | 70.06 |
| CDX69676 | Canola | plastid | 77.87 | 69.63 |
| Bra008862.1-P | Field mustard | plastid | 77.87 | 69.63 |
| AT5G13030.1 | Thale cress | plastid | 76.66 | 69.51 |
| Zm00001d045897_P003 | Maize | plastid | 76.66 | 68.32 |
| CDX70490 | Canola | plastid | 75.26 | 68.14 |
| OQU76338 | Sorghum | mitochondrion | 70.56 | 60.0 |
Protein Annotations
| EnsemblPlants:Solyc01g006490.2.1 | EnsemblPlantsGene:Solyc01g006490.2 | HAMAP:MF_00692 | InterPro:UPF0061 | PANTHER:PTHR32057 | PFAM:PF02696 |
| UniParc:UPI00024541FD | UniProt:K4ASL5 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1:-:1081667..1087120
Molecular Weight (calculated)
64260.5 Da
IEP (calculated)
4.992
GRAVY (calculated)
-0.311
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MESAAVTVES VADKLKKQSL GNDGSNSKRM LKLEELNWDH SFVRELPADP RTDTIPREVL HACYTKMLPS VEVENPQLVV WSDSVAELLE LDPKEFERPD
101: FPLLFSGASP LVGAVPYAQN YGGHQFGMWA GQLGDGRAIT LGEVLNSKSE RWELQLKGAG KTPYSRFADG LAVLRSSIRE FLCSEAMHSL GIPTTRALCL
201: VMTGKDVSRD MFYDGNPKDE PGAIVCRVAE SFLRFGSYQL HASRGKEDLE IVRTLADYTI RHHFPHLENM CKSESISFSI GEEDDTVVDL TSNKYAAWAV
301: EVAEQTASTI ARWQGVGFTH GVMNTDNMSV LGLTIDYGPF GFLDAFDPSF TPNTTDLPGR RYCFANQPDI GLWNVAQFAT SLSTAQLLND KEANYAIERY
401: GIKFMDDYQA IMTKKLGLVK YNKQMIGELL KNMAVDKVDY TNFFRLLSNI KADPTIPDNQ LLIPLKAALL DIGQERKEAW TSWVKSYIQE LSTIGVSDDE
501: RKASMNSVNP KYILRNYLCQ SAIDAAEQDD FGEVRRLLKV MQRPFDEQPG MEKYARLPPA WAYRPGVGML SCSS
101: FPLLFSGASP LVGAVPYAQN YGGHQFGMWA GQLGDGRAIT LGEVLNSKSE RWELQLKGAG KTPYSRFADG LAVLRSSIRE FLCSEAMHSL GIPTTRALCL
201: VMTGKDVSRD MFYDGNPKDE PGAIVCRVAE SFLRFGSYQL HASRGKEDLE IVRTLADYTI RHHFPHLENM CKSESISFSI GEEDDTVVDL TSNKYAAWAV
301: EVAEQTASTI ARWQGVGFTH GVMNTDNMSV LGLTIDYGPF GFLDAFDPSF TPNTTDLPGR RYCFANQPDI GLWNVAQFAT SLSTAQLLND KEANYAIERY
401: GIKFMDDYQA IMTKKLGLVK YNKQMIGELL KNMAVDKVDY TNFFRLLSNI KADPTIPDNQ LLIPLKAALL DIGQERKEAW TSWVKSYIQE LSTIGVSDDE
501: RKASMNSVNP KYILRNYLCQ SAIDAAEQDD FGEVRRLLKV MQRPFDEQPG MEKYARLPPA WAYRPGVGML SCSS
001: MLLRVCCPSS FFYLRPLHLF SSTAKVPFCP SLPRQFRLSP SRSSSFRRME SSPASSSSPT PVTDSSADSL AKDLQNQSLG AVDEGVKIKK KLEDFNWDHS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS
Arabidopsis Description
Selenoprotein O [Source:UniProtKB/TrEMBL;Acc:Q8H126]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.