Factsheet for GSMUA_Achr3P11720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P06390_001	Banana	cytosol	81.93	86.32
HORVU7Hr1G046290.3	Barley	cytosol	79.47	83.73
VIT_06s0004g01360.t01	Wine grape	cytosol	82.11	81.25
Solyc01g006490.2.1	Tomato	cytosol	79.3	78.75
PGSC0003DMT400082019	Potato	cytosol	79.12	78.57
Bra006176.1-P	Field mustard	cytosol	77.19	76.79
TraesCS7A01G227000.1	Wheat	mitochondrion	80.7	74.43
KRG93074	Soybean	nucleus	77.02	74.41
TraesCS7D01G227400.2	Wheat	mitochondrion	80.53	74.27
TraesCS7B01G192600.1	Wheat	mitochondrion	80.35	74.11
Os06t0320700-01	Rice	plasma membrane	80.18	73.0
Zm00001d045897_P003	Maize	plastid	81.4	72.05
CDX78502	Canola	plastid	77.02	70.81
CDX97219	Canola	plastid	78.42	70.06
AT5G13030.1	Thale cress	plastid	77.72	69.98
Solyc12g100200.1.1	Tomato	plastid	75.44	69.58
CDX69676	Canola	plastid	78.25	69.47
Bra008862.1-P	Field mustard	plastid	78.25	69.47
CDX70490	Canola	plastid	77.19	69.4
OQU76338	Sorghum	mitochondrion	74.04	62.52

Protein Annotations

EnsemblPlants:GSMUA_Achr3P11720_001	EnsemblPlants:GSMUA_Achr3T11720_001	EnsemblPlantsGene:GSMUA_Achr3G11720_001	HAMAP:MF_00692	InterPro:UPF0061	PANTHER:PTHR32057
PFAM:PF02696	UniParc:UPI000296EEFD	UniProt:M0SDT9	MapMan:35.2	:	:

Description

UPF0061 protein azo1574 [Source:GMGC_GENE;Acc:GSMUA_Achr3G11720_001]

Coordinates

chr3:+:8717945..8723203

Molecular Weight (calculated)

63308.1 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.299

Length

570 amino acids

Sequence
(BLAST)

001: MESKTEARDP AAESPAALAD GGKGVRLKLE EFNWDHSFVR ELPGDPRSDT IPRQVLHACY SKVSPSAEVE SPELVAWSES VAELLDLDPK EFERPDFPLI
101: FSGALPLKGG LPYAQCYGGH QFGVWAGQLG DGRAITLGEL LNSRGKRWEL QLKGAGKTPY SRFADGLAVL RSSIREFLCS EAMIGLGIPT TRALSLVTTG
201: KFVSRDMFYD GNPKDEPGAI VCRVAQSFLR FGSYQIHASR GKEDLDLVRT LADYTICHHF PHIEKMSKSD DLSFEVGVEG SLIVDLTSNK YAAWSVEVAE
301: RTASLIASWQ GVGFTHGVLN TDNMSVLGLT IDYGPFGFLD AFDPSYTPNT TDLPGRRYCF ANQPDIGLWN IAQFTATLSA AQLISKEEAN YAMERYGDKF
401: MDEYQSIMTR KLGLSKYNKQ LISTLLNNMA VDKVDYTNFF RLLSNIKADT GTPKNELLVP LKAALLDIGQ ERKEAWTTWV QTYIEELVAS GTSDDERKAA
501: MNSVNPKYIL RNYLCQSAID AAEQGDYGEV RRLLKLMEHP YDDQPGMEKY ARLPPAWAYR PGVCMLSCSS

Best Arabidopsis Sequence Match ( AT5G13030.1 )
(BLAST)

001: MLLRVCCPSS FFYLRPLHLF SSTAKVPFCP SLPRQFRLSP SRSSSFRRME SSPASSSSPT PVTDSSADSL AKDLQNQSLG AVDEGVKIKK KLEDFNWDHS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS

Arabidopsis Description

Selenoprotein O [Source:UniProtKB/TrEMBL;Acc:Q8H126]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.