Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g006490.2.1 | Tomato | cytosol | 97.04 | 97.04 |
| VIT_06s0004g01360.t01 | Wine grape | cytosol | 82.23 | 81.94 |
| HORVU7Hr1G046290.3 | Barley | cytosol | 74.91 | 79.48 |
| GSMUA_Achr3P11720_001 | Banana | cytosol | 78.57 | 79.12 |
| GSMUA_Achr7P06390_001 | Banana | cytosol | 72.82 | 77.26 |
| Bra006176.1-P | Field mustard | cytosol | 75.61 | 75.74 |
| KRG93074 | Soybean | nucleus | 77.18 | 75.08 |
| TraesCS7A01G227000.1 | Wheat | mitochondrion | 75.96 | 70.55 |
| TraesCS7D01G227400.2 | Wheat | mitochondrion | 75.96 | 70.55 |
| TraesCS7B01G192600.1 | Wheat | mitochondrion | 75.78 | 70.39 |
| CDX78502 | Canola | plastid | 75.96 | 70.32 |
| Os06t0320700-01 | Rice | plasma membrane | 76.48 | 70.13 |
| CDX97219 | Canola | plastid | 77.53 | 69.75 |
| AT5G13030.1 | Thale cress | plastid | 76.66 | 69.51 |
| CDX69676 | Canola | plastid | 77.7 | 69.47 |
| Bra008862.1-P | Field mustard | plastid | 77.53 | 69.31 |
| CDX70490 | Canola | plastid | 75.78 | 68.61 |
| Zm00001d045897_P003 | Maize | plastid | 76.13 | 67.86 |
| OQU76338 | Sorghum | mitochondrion | 70.03 | 59.56 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400082019 | EnsemblPlantsGene:PGSC0003DMG400032205 | HAMAP:MF_00692 | InterPro:UPF0061 | PANTHER:PTHR32057 | PFAM:PF02696 |
| PGSC:PGSC0003DMG400032205 | UniParc:UPI000295444B | UniProt:M1D5H3 | MapMan:35.2 | : | : |
Description
Selenoprotein O [Source:PGSC_GENE;Acc:PGSC0003DMG400032205]
Coordinates
chr1:-:2075479..2082422
Molecular Weight (calculated)
64442.7 Da
IEP (calculated)
5.225
GRAVY (calculated)
-0.325
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MESAAVTVDS VADKLKKQSL GNDGSNSKRM LKLEELNWDH SFVRELPADP RTDTIPREVL HACYTKMLPS VEVENPQLVV WSESVAELLE LDPKEFERPD
101: FPLLFSGASP LVRAVPYAQN YGGHQFGMWA GQLGDGRAIT LGEVLNSKSE RWELQLKGAG KTPYSRFADG LAVLRSSIRE FLCSEAMHSL GIPTTRALCL
201: VMTGKDVSRD MFYDGNPKDE PGAIVCRVAE SFLRFGSYQL HAFRGKEDLE IVRTLADYTI RLHFPHLENM SKSESISFST GEEDDSVVDL TSNKYAAWAV
301: EVAERTASTI ARWQGVGFTH GVMNTDNMSV LGLTIDYGPF GFLDAFDPSF TPNTTDLPGR RYCFANQPDI GLWNVAQFAT TLSTAQLLND KEANYAMERY
401: GIKFMDDYQV IMTKKLGLVK YNKHMIGELL KNMAVDKVDY TNFFRLLSNI KADPTISDKQ LLIPLKAALL DIGQERKEAW TSWVKSYIQE LSTSGVSDDE
501: RKASMNSVNP KYILRNYLCQ SAIDAAEQED FGEVRRLLKV MQRPFDEQPG MEKYARLPPA WAYRPGVGML SCSS
101: FPLLFSGASP LVRAVPYAQN YGGHQFGMWA GQLGDGRAIT LGEVLNSKSE RWELQLKGAG KTPYSRFADG LAVLRSSIRE FLCSEAMHSL GIPTTRALCL
201: VMTGKDVSRD MFYDGNPKDE PGAIVCRVAE SFLRFGSYQL HAFRGKEDLE IVRTLADYTI RLHFPHLENM SKSESISFST GEEDDSVVDL TSNKYAAWAV
301: EVAERTASTI ARWQGVGFTH GVMNTDNMSV LGLTIDYGPF GFLDAFDPSF TPNTTDLPGR RYCFANQPDI GLWNVAQFAT TLSTAQLLND KEANYAMERY
401: GIKFMDDYQV IMTKKLGLVK YNKHMIGELL KNMAVDKVDY TNFFRLLSNI KADPTISDKQ LLIPLKAALL DIGQERKEAW TSWVKSYIQE LSTSGVSDDE
501: RKASMNSVNP KYILRNYLCQ SAIDAAEQED FGEVRRLLKV MQRPFDEQPG MEKYARLPPA WAYRPGVGML SCSS
001: MLLRVCCPSS FFYLRPLHLF SSTAKVPFCP SLPRQFRLSP SRSSSFRRME SSPASSSSPT PVTDSSADSL AKDLQNQSLG AVDEGVKIKK KLEDFNWDHS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS
Arabidopsis Description
Selenoprotein O [Source:UniProtKB/TrEMBL;Acc:Q8H126]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.