Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97219 | Canola | plastid | 89.1 | 88.4 |
| Bra006176.1-P | Field mustard | cytosol | 78.99 | 87.26 |
| CDX69676 | Canola | plastid | 88.31 | 87.07 |
| Bra008862.1-P | Field mustard | plastid | 88.15 | 86.92 |
| CDX70490 | Canola | plastid | 84.2 | 84.07 |
| CDX78502 | Canola | plastid | 82.31 | 84.03 |
| VIT_06s0004g01360.t01 | Wine grape | cytosol | 72.67 | 79.86 |
| GSMUA_Achr3P11720_001 | Banana | cytosol | 69.98 | 77.72 |
| PGSC0003DMT400082019 | Potato | cytosol | 69.51 | 76.66 |
| Solyc01g006490.2.1 | Tomato | cytosol | 69.51 | 76.66 |
| HORVU7Hr1G046290.3 | Barley | cytosol | 65.4 | 76.53 |
| GSMUA_Achr7P06390_001 | Banana | cytosol | 64.45 | 75.42 |
| KRG93074 | Soybean | nucleus | 68.88 | 73.9 |
| Solyc12g100200.1.1 | Tomato | plastid | 67.93 | 69.58 |
| Zm00001d045897_P003 | Maize | plastid | 69.35 | 68.17 |
| TraesCS7A01G227000.1 | Wheat | mitochondrion | 66.51 | 68.12 |
| TraesCS7D01G227400.2 | Wheat | mitochondrion | 66.51 | 68.12 |
| Os06t0320700-01 | Rice | plasma membrane | 67.14 | 67.89 |
| TraesCS7B01G192600.1 | Wheat | mitochondrion | 66.19 | 67.8 |
| OQU76338 | Sorghum | mitochondrion | 63.35 | 59.41 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831143 | UniProt:A0A178U9F5 | ProteinID:AED91843.1 | ArrayExpress:AT5G13030 | EnsemblPlantsGene:AT5G13030 |
| RefSeq:AT5G13030 | TAIR:AT5G13030 | RefSeq:AT5G13030-TAIR-G | EnsemblPlants:AT5G13030.1 | TAIR:AT5G13030.1 | Unigene:At.20443 |
| EMBL:BT000882 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | HAMAP:MF_00692 | RefSeq:NP_196807.2 | ProteinID:OAO90320.1 |
| PFAM:PF02696 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR32057 | UniProt:Q8H126 | InterPro:UPF0061 | UniParc:UPI00000ADB05 |
| SEG:seg | : | : | : | : | : |
Description
Selenoprotein O [Source:UniProtKB/TrEMBL;Acc:Q8H126]
Coordinates
chr5:+:4133134..4136688
Molecular Weight (calculated)
71101.7 Da
IEP (calculated)
6.669
GRAVY (calculated)
-0.376
Length
633 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRVCCPSS FFYLRPLHLF SSTAKVPFCP SLPRQFRLSP SRSSSFRRME SSPASSSSPT PVTDSSADSL AKDLQNQSLG AVDEGVKIKK KLEDFNWDHS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.