Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G046290.3 | Barley | cytosol | 80.35 | 92.98 |
| TraesCS7A01G227000.1 | Wheat | mitochondrion | 83.39 | 84.47 |
| TraesCS7D01G227400.2 | Wheat | mitochondrion | 83.07 | 84.14 |
| TraesCS7B01G192600.1 | Wheat | mitochondrion | 83.07 | 84.14 |
| GSMUA_Achr3P11720_001 | Banana | cytosol | 73.0 | 80.18 |
| Zm00001d045897_P003 | Maize | plastid | 82.11 | 79.81 |
| VIT_06s0004g01360.t01 | Wine grape | cytosol | 72.36 | 78.65 |
| GSMUA_Achr7P06390_001 | Banana | cytosol | 67.09 | 77.63 |
| Solyc01g006490.2.1 | Tomato | cytosol | 70.13 | 76.48 |
| PGSC0003DMT400082019 | Potato | cytosol | 70.13 | 76.48 |
| KRG93074 | Soybean | nucleus | 69.81 | 74.07 |
| Bra006176.1-P | Field mustard | cytosol | 67.73 | 74.0 |
| Solyc12g100200.1.1 | Tomato | plastid | 69.01 | 69.9 |
| OQU76338 | Sorghum | mitochondrion | 74.12 | 68.74 |
| CDX78502 | Canola | plastid | 68.05 | 68.71 |
| CDX97219 | Canola | plastid | 69.65 | 68.34 |
| CDX69676 | Canola | plastid | 69.97 | 68.22 |
| Bra008862.1-P | Field mustard | plastid | 69.97 | 68.22 |
| CDX70490 | Canola | plastid | 68.37 | 67.51 |
| AT5G13030.1 | Thale cress | plastid | 67.89 | 67.14 |
Protein Annotations
| EnsemblPlants:Os06t0320700-01 | EnsemblPlantsGene:Os06g0320700 | EntrezGene:4340893 | HAMAP:MF_00692 | InterPro:UPF0061 | PANTHER:PTHR32057 |
| PFAM:PF02696 | ProteinID:BAD61584.1 | ProteinID:BAF19428.1 | ProteinID:BAS97504.1 | RefSeq:XP_015644245.1 | SEG:seg |
| UniParc:UPI00004505EB | UniProt:Q5ZA96 | MapMan:35.2 | : | : | : |
Description
Uncharacterised protein family UPF0061 domain containing protein. (Os06t0320700-01)
Coordinates
chr6:-:12456786..12462588
Molecular Weight (calculated)
69499.9 Da
IEP (calculated)
6.700
GRAVY (calculated)
-0.293
Length
626 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPHLSSSLF SSSPLPTALL SSLTRRARAL LPLPLPLPAA STRRRLPLRR GPLLTRGIMA SAAAEAPAPS PSPTAAANSR PRRVLEELSW DDSFVRELPG
101: DPRSDAIPRE VLHACYTKVS PSAPVDNPKL VAWSQSVADI LDLDHKEFER PDFPQLFSGA NPLVGSSPYA QCYGGHQFGS WAGQLGDGRA ITLGEVINSR
201: GERWELQLKG CGKTPYSRFA DGLAVLRSSI REFLCSEAMH GLGIPTTRAL CLVETGKSVV RDMFYDGNSK EEPGAIVCRV APSFLRFGSY QIHATRDKED
301: LEIVRHLADY TIRHHYPHLE NIKKSEGLSF EAAIGDSPAI DLTSNKYAAW AVEVAERTAF LIARWQGVGF THGVLNTDNM SVLGLTIDYG PFGFLDAFDP
401: SYTPNTTDLP GKRYCFANQP DVGLWNIAQF TSPLTAAELI SKDEANYVME RYGTKFMDEY QSIMTRKLGL PKYNKQLIGK LLNNLAVDKV DYTNFFRLLS
501: NVKADHNIPE KELLVPLKAA LLDIGPERKE AWISWVQTYI EELVSSGVPD EERKAAMNSV NPKYVLRNYL CQTAIDAAEQ GDYDEVRRLL KVMEHPYDEQ
601: PGMEKYARLP PAWAYRPGVC MLSCSS
101: DPRSDAIPRE VLHACYTKVS PSAPVDNPKL VAWSQSVADI LDLDHKEFER PDFPQLFSGA NPLVGSSPYA QCYGGHQFGS WAGQLGDGRA ITLGEVINSR
201: GERWELQLKG CGKTPYSRFA DGLAVLRSSI REFLCSEAMH GLGIPTTRAL CLVETGKSVV RDMFYDGNSK EEPGAIVCRV APSFLRFGSY QIHATRDKED
301: LEIVRHLADY TIRHHYPHLE NIKKSEGLSF EAAIGDSPAI DLTSNKYAAW AVEVAERTAF LIARWQGVGF THGVLNTDNM SVLGLTIDYG PFGFLDAFDP
401: SYTPNTTDLP GKRYCFANQP DVGLWNIAQF TSPLTAAELI SKDEANYVME RYGTKFMDEY QSIMTRKLGL PKYNKQLIGK LLNNLAVDKV DYTNFFRLLS
501: NVKADHNIPE KELLVPLKAA LLDIGPERKE AWISWVQTYI EELVSSGVPD EERKAAMNSV NPKYVLRNYL CQTAIDAAEQ GDYDEVRRLL KVMEHPYDEQ
601: PGMEKYARLP PAWAYRPGVC MLSCSS
001: MLLRVCCPSS FFYLRPLHLF SSTAKVPFCP SLPRQFRLSP SRSSSFRRME SSPASSSSPT PVTDSSADSL AKDLQNQSLG AVDEGVKIKK KLEDFNWDHS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS
Arabidopsis Description
Selenoprotein O [Source:UniProtKB/TrEMBL;Acc:Q8H126]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.