Factsheet for VIT_06s0004g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G046290.3	Barley	cytosol	77.26	82.26
PGSC0003DMT400082019	Potato	cytosol	81.94	82.23
GSMUA_Achr3P11720_001	Banana	cytosol	81.25	82.11
Solyc01g006490.2.1	Tomato	cytosol	81.77	82.06
GSMUA_Achr7P06390_001	Banana	cytosol	75.52	80.41
Bra006176.1-P	Field mustard	cytosol	77.08	77.49
KRG93074	Soybean	nucleus	77.95	76.1
Solyc12g100200.1.1	Tomato	plastid	78.99	73.62
AT5G13030.1	Thale cress	plastid	79.86	72.67
TraesCS7A01G227000.1	Wheat	mitochondrion	77.95	72.65
TraesCS7D01G227400.2	Wheat	mitochondrion	77.95	72.65
Os06t0320700-01	Rice	plasma membrane	78.65	72.36
TraesCS7B01G192600.1	Wheat	mitochondrion	77.6	72.33
CDX97219	Canola	plastid	79.34	71.63
CDX78502	Canola	plastid	77.08	71.61
CDX69676	Canola	plastid	79.17	71.03
Bra008862.1-P	Field mustard	plastid	79.17	71.03
Zm00001d045897_P003	Maize	plastid	78.3	70.03
CDX70490	Canola	plastid	76.91	69.87
OQU76338	Sorghum	mitochondrion	72.92	62.22

Protein Annotations

EntrezGene:100246701	wikigene:100246701	MapMan:35.2	EMBL:AM427630	ProteinID:CAN71359	ProteinID:CAN71359.1
ProteinID:CCB43760	ProteinID:CCB43760.1	UniProt:F6GUD9	EMBL:FN594951	EntrezGene:LOC100246701	wikigene:LOC100246701
HAMAP:MF_00692	PFAM:PF02696	PANTHER:PTHR32057	TIGR:TC60671	TIGR:TC70056	InterPro:UPF0061
UniParc:UPI0002108C2D	ArrayExpress:VIT_06s0004g01360	EnsemblPlantsGene:VIT_06s0004g01360	EnsemblPlants:VIT_06s0004g01360.t01	unigene:Vvi.5515	RefSeq:XP_002285614
RefSeq:XP_002285614.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:1609324..1614951

Molecular Weight (calculated)

64360.5 Da

IEP (calculated)

5.117

GRAVY (calculated)

-0.286

Length

576 amino acids

Sequence
(BLAST)

001: MEASPSADAA ATVESLADGL RNQRLGSENR VLLRLEDLNW DHSFVHELPG DPRTDPIPRQ VLHACYTKIS PSAEVENPQL VAWLESVAEL LDLDPKEFER
101: PDFPLIFSGA SLLVGGLPYA QCYGGHQFGM WAGQLGDGRA ITLGELLNSK SERWELQLKG AGRTPYSRFA DGLAVLRSSI REFLCSEAMH SLGIPTTRAL
201: CLVTTGKYVT RDMFYDGNPK EEPGAIVCRV AQSFLRFGSY QIHAARGKED LGIVRALADY TIRHHFPHIE NMTRSEGLSF STGEQDESIV DLTSNKYAAW
301: SVEVAERTAS LVASWQGVGF THGVLNTDNM SVLGLTIDYG PFGFLDAFDP SYTPNTTDLP GRRYCFANQP DIGLWNIAQF TSTLMSAELI NDKEANYAME
401: RYGTKFMDEY QAIMTRKLGL PKYNKQLISK LLNNMAVDKV DYTNFFRLLS NIKADPTIPQ DELLTPLKAV LLDIGKERKE SWISWVQSYI QELAASGISD
501: EERKASMNSV NPKYVLRNYL CQSAIDAAEQ GDFGVVRRIL KIMERPYDEQ PGMEKYARLP PAWAYRPGVC MLSCSS

Best Arabidopsis Sequence Match ( AT5G13030.1 )
(BLAST)

001: MLLRVCCPSS FFYLRPLHLF SSTAKVPFCP SLPRQFRLSP SRSSSFRRME SSPASSSSPT PVTDSSADSL AKDLQNQSLG AVDEGVKIKK KLEDFNWDHS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS

Arabidopsis Description

Selenoprotein O [Source:UniProtKB/TrEMBL;Acc:Q8H126]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.