CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006176.1-P	Field mustard	cytosol	86.12	95.29
CDX78502	Canola	plastid	90.38	92.42
AT5G13030.1	Thale cress	plastid	84.07	84.2
CDX97219	Canola	plastid	84.38	83.86
CDX69676	Canola	plastid	84.86	83.8
GSMUA_Achr3P11720_001	Banana	cytosol	69.4	77.19
HORVU7Hr1G046290.3	Barley	cytosol	65.77	77.08
VIT_06s0004g01360.t01	Wine grape	cytosol	69.87	76.91
PGSC0003DMT400082019	Potato	cytosol	68.61	75.78
Solyc01g006490.2.1	Tomato	cytosol	68.14	75.26
GSMUA_Achr7P06390_001	Banana	cytosol	63.56	74.49
KRG93074	Soybean	nucleus	67.51	72.54
TraesCS7A01G227000.1	Wheat	mitochondrion	67.35	69.09
TraesCS7B01G192600.1	Wheat	mitochondrion	67.19	68.93
TraesCS7D01G227400.2	Wheat	mitochondrion	67.19	68.93
Os06t0320700-01	Rice	plasma membrane	67.51	68.37
Solyc12g100200.1.1	Tomato	plastid	65.46	67.15
Zm00001d045897_P003	Maize	plastid	68.14	67.08
OQU76338	Sorghum	mitochondrion	62.3	58.52

Protein Annotations

EnsemblPlants:CDX70490	EnsemblPlantsGene:GSBRNA2T00140318001	HAMAP:MF_00692	InterPro:UPF0061	PANTHER:PTHR32057	PFAM:PF02696
ProteinID:CDX70490	ProteinID:CDX70490.1	SEG:seg	UniParc:UPI0004EB9D51	MapMan:35.2	:

Description

BnaC03g05740D

Coordinates

chrLK031791:+:673873..677265

Molecular Weight (calculated)

71079.9 Da

IEP (calculated)

5.459

GRAVY (calculated)

-0.422

Length

634 amino acids

Sequence
(BLAST)

001: MSLRVCPSSL FHLRPLHLFT SSAKFPFYPS LRREFRFAPS RSSSSSSSSF RLMDSSAASS PTPVTASETD SLGEETQSQT DEGDKIERKL EEFNWDHSFV
101: KELPGDPRSD VISRKVLHAC YSKVSPSVQV DDPRLVSWSE SVAELLDLHP KEFERLDFPL LLSGAKPLPG AMPYAQCYGG HQFGRWAGQL GDGRAITLGE
201: VLNSKGERWE LQLKGAGRTP YSRFSDGLAV LRSSIREFLC SEAMHCLGIP TTRALCLLTT GQGVIRDMFY DGNAKEEPGA IVCRVSQSFI RFGSYQIHAS
301: RGKEDLEIVG KLADYAIRHH FPRIEKSMNR SDGLSFKTGD DDDDSVLDLT SNKYAAWVVE VAERTATLFA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFAEA LAAAQLINEK VANYAMERYG DKFMDEYEAI MTKKLGLSKY NKEMISELLN NMAVDKVDYT
501: NFFRLLSNVK ADPNTSDDEL LNPLKAALLD IGKERKEEWI KWVRGYIHEV SGGDTPSDEE RKARMDSVNP KYILRNYLCQ SAIDAAEQGD FSEVNNLLRL
601: MKRPYEEQPG MEKYAGLPPA WAYRPGVCML SCSS

Best Arabidopsis Sequence Match ( AT5G13030.1 )
(BLAST)

001: MLLRVCCPSS FFYLRPLHLF SSTAKVPFCP SLPRQFRLSP SRSSSFRRME SSPASSSSPT PVTDSSADSL AKDLQNQSLG AVDEGVKIKK KLEDFNWDHS
101: FVKELPGDPR TDVISREVLH ACYSKVSPSV EVDDPQLVAW SVSVAELLDL DPKEFERPDF PLMLSGAKPL PGAMSYAQCY GGHQFGMWAG QLGDGRAITL
201: GEVLNSKGER WELQLKGAGR TPYSRFADGL AVLRSSIREF LCSETMHCLG IPTTRALCLL TTGQNVTRDM FYDGNPKEEP GAIVCRVSQS FLRFGSYQIH
301: ASRGKEDLDI VRKLADYAIK HHFPHIESMD RSDSLSFKTG DEDDSVVDLT SNKYAAWIVE IAERTATLVA RWQGVGFTHG VLNTDNMSIL GQTIDYGPFG
401: FLDAFDPSYT PNTTDLPGRR YCFANQPDIG LWNIAQFSKT LAVAQLINQK EANYAMERYG DKFMDEYQAI MSKKLGLTKY NKEVISKLLN NMSVDKVDYT
501: NFFRLLANVK ANPNTPENEL LKPLKAVLLD IGKERKEAWI KWMRSYIQEV GGSEVSDEER KARMDSVNPK YILRNYLCQS AIDAAEQGDF SEVNNLIRLM
601: KRPYEEQPGM EKYARLPPAW AYRPGVCMLS CSS

Arabidopsis Description

Selenoprotein O [Source:UniProtKB/TrEMBL;Acc:Q8H126]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.