Factsheet for Zm00001d015168_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31524	Sorghum	cytosol	95.24	95.06
Zm00001d008975_P002	Maize	cytosol	93.59	93.76
Os02t0686400-01	Rice	extracellular	90.11	89.62
TraesCS5D01G165200.1	Wheat	cytosol, golgi	87.0	87.32
TraesCS5A01G160100.2	Wheat	cytosol	87.18	87.18
HORVU5Hr1G050160.1	Barley	cytosol	86.45	86.76
TraesCS5B01G157800.1	Wheat	cytosol	86.45	86.13
HORVU7Hr1G107410.1	Barley	cytosol	76.56	77.55
CDX73541	Canola	cytosol	26.92	70.33
KRH15638	Soybean	nucleus	67.95	68.32
KRH05378	Soybean	nucleus	67.58	67.83
VIT_04s0008g03010.t01	Wine grape	cytosol	66.3	66.54
Solyc05g056250.2.1	Tomato	plastid	66.3	66.54
HORVU6Hr1G022660.15	Barley	cytosol	47.07	64.25
HORVU7Hr1G011750.7	Barley	cytosol, mitochondrion, nucleus	46.34	63.89
AT4G31180.1	Thale cress	cytosol	64.29	62.9
CDX68726	Canola	extracellular	63.19	62.84
CDY28248	Canola	cytosol	63.0	62.66
Bra011251.1-P	Field mustard	cytosol	63.0	62.66
CDY35247	Canola	cytosol	59.16	61.06
AT4G26870.1	Thale cress	cytosol	58.79	60.34
HORVU4Hr1G090760.1	Barley	cytosol	44.51	60.3
CDY14727	Canola	cytosol	58.61	59.59
CDX78190	Canola	cytosol	19.05	59.09
Bra007014.1-P	Field mustard	cytosol	19.05	59.09
CDY13418	Canola	cytosol	58.97	58.33
Bra024018.1-P	Field mustard	cytosol	58.97	58.33
CDX72297	Canola	cytosol	58.97	58.12
GSMUA_Achr10P...	Banana	cytosol	14.29	53.42
CDY06845	Canola	nucleus	45.97	49.51
Zm00001d006377_P001	Maize	mitochondrion	21.06	20.95
Zm00001d021507_P002	Maize	plastid	20.88	20.77
Zm00001d009271_P003	Maize	cytosol	20.33	19.75
Bra011081.1-P	Field mustard	cytosol	56.04	17.29

Protein Annotations

EntrezGene:100283444	MapMan:17.2.4	Gene3D:2.40.50.140	Gene3D:3.30.930.10	ProteinID:AQK68204.1	InterPro:Asp-tRNA_synthase_2
InterPro:Asp/Asn-tRNA-synth_IIb	EMBL:BT063304	UniProt:C0P4T5	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004812	GO:GO:0004815	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006422	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874
GO:GO:0019538	InterPro:IPR006195	HAMAP:MF_02075	InterPro:NA-bd_OB-fold	PFAM:PF00152	PRINTS:PR01042
PFscan:PS50862	PANTHER:PTHR43450	PANTHER:PTHR43450:SF1	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00458
UniParc:UPI0001948B93	EnsemblPlantsGene:Zm00001d015168	EnsemblPlants:Zm00001d015168_P001	EnsemblPlants:Zm00001d015168_T001	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

aspartyl-tRNA synthetase1Aspartate--tRNA ligase 2 cytoplasmic

Coordinates

chr5:-:78188078..78192203

Molecular Weight (calculated)

60799.7 Da

IEP (calculated)

6.341

GRAVY (calculated)

-0.299

Length

546 amino acids

Sequence
(BLAST)

001: MSSEPPPASS AAAGEELAAD LSAATLSKKQ QKKDARKAEK AEQRQRQQQQ QQQPADAEDP FAANYGEVPV EEIQSKAISG RSWSHVGDLD DSAAGRSVLI
101: RGAAQAIRPV SKKMAFVVLR QSMSTVQCVL VASADAGVST QMVRFATALS KESIVDVEGV VSLPKEPLKA TTQQVEIQVR KIYCINRAIP TLPINLEDAA
201: RSEADFEKAE LAGEKLVRVG QDTRLNYRAI DLRTPSNQAI FRIQCQVENK FRDFLLSKNF VGIHTPKLIS GSSEGGAAVF KLLYNGQPAC LAQSPQLYKQ
301: MAISGGFERV FEVGPVFRAE NSNTHRHLCE FVGLDAEMEI KEHYFEVCDI IDGLFVSIFK HLSENCKKEL ESINRQYPFE PLKYLDKTLK LTYEEGIQML
401: KEAGTEIEPM GDLNTEAEKK LGRLVREKYD TDFFILYRYP LAVRPFYTMP CYDNPAYTNS FDVFIRGEEI ISGAQRIHTP ELLAKRATEC GIDVSTISAY
501: IESFSYGVPP HGGFGVGLER VVMLFCALNN IRKTSLFPRD PQRLVP

Best Arabidopsis Sequence Match ( AT4G31180.2 )
(BLAST)

001: MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD
101: LVEEMLESEV LIRGRVHTNR PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL TGTTQQVEIQ VRKVYCINKS
201: LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP
301: ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT
401: LRLTFEEGVQ MLKEAGVEVD PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE EIISGAQRVH IPEVLEQRAG
501: ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL NNIRKTSLFP RDPQRLSP

Arabidopsis Description

IBI1Aspartate--tRNA ligase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M084]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.