Factsheet for Zm00001d021507_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36232	Sorghum	mitochondrion	97.27	96.74
Zm00001d006377_P001	Maize	mitochondrion	96.17	96.17
TraesCS2A01G231500.2	Wheat	cytosol	71.22	92.22
TraesCS2D01G235900.1	Wheat	mitochondrion	85.79	88.87
TraesCS2B01G255900.2	Wheat	mitochondrion	86.52	88.62
HORVU2Hr1G049240.1	Barley	mitochondrion	85.79	88.04
Os07t0485400-01	Rice	cytosol	34.61	86.76
Bra026243.1-P	Field mustard	plastid	74.32	72.47
Solyc03g019940.2.1	Tomato	plastid	75.23	72.33
PGSC0003DMT400039341	Potato	mitochondrion, plastid	75.05	72.15
CDY42978	Canola	plastid	73.95	72.11
Bra021059.1-P	Field mustard	plastid	73.22	71.53
CDY58174	Canola	plastid	73.22	71.53
KRH04132	Soybean	plastid	71.4	71.27
KRH57405	Soybean	plastid	71.4	71.14
VIT_00s0229g00020.t01	Wine grape	plastid	75.41	70.89
CDY50134	Canola	plastid	72.31	70.64
CDY35583	Canola	plastid	71.95	70.54
AT4G17300.2	Thale cress	cytosol, plastid	72.5	67.8
GSMUA_Achr2P18500_001	Banana	plasma membrane	76.5	50.66
Zm00001d009271_P003	Maize	cytosol	49.18	48.04
Zm00001d015168_P001	Maize	extracellular, plasma membrane	20.77	20.88
Zm00001d008975_P002	Maize	cytosol	20.58	20.73

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	Gene3D:2.40.50.140	Gene3D:3.30.930.10	UniProt:A0A1D6IBP5	InterPro:Asn-tRNA-ligase
InterPro:Asp/Asn-tRNA-synth_IIb	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812
GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	GO:GO:0019538	InterPro:IPR006195
HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	ProteinID:ONM57352.1	ProteinID:ONM57353.1	PFAM:PF00152
PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR22594	PANTHER:PTHR22594:SF44	SUPFAM:SSF50249
SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0008438C86	EnsemblPlantsGene:Zm00001d021507	EnsemblPlants:Zm00001d021507_P002	EnsemblPlants:Zm00001d021507_T002
InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:

Description

Asparagine--tRNA ligase chloroplastic/mitochondrial

Coordinates

chr7:+:154419410..154425081

Molecular Weight (calculated)

60912.3 Da

IEP (calculated)

6.297

GRAVY (calculated)

-0.243

Length

549 amino acids

Sequence
(BLAST)

001: MSAAAAARLL RLAPRRLQVP KASPLAAISF PLPRTTPLSA ASGRRQRFCA AAQAPAPAYA ATGTAGEAVG EFRKRLRVAD VKGGEDEGAA WVGKELAVRG
101: WVRTCRAQRT VTFVEVNDGS CLSNMQCVLT PETEGYDQID SVTTGASVLV EGVVASSQGG KQKVELKVSK ITVIGKSDPT SFPIQKKRAS REFLRTVAHL
201: RPRTNTFGAV ARVRNALAYA THKFFQDNGF VWVSSPIITA SDCEGAGEQF YVTTLLSNST EGGSLLKDIP ATKDGRVDWS QDFFCKPAFL TVSGQLNGET
301: YASALSDIYT FGPTFRAENS NTARHLAEFW MIEPELAFAD LNDDMACATA YLQYVVKYIL ENCKEDMDFF NTWVEKGIID RLNDVVEKNF VHLSYTDAVE
401: LLLGSKKKFE FPVKWGLDLQ SEHERYITEV AFDGRPVIIR DYPKEIKAFY MRENDDGKTV AAMDLLVPRV GELIGGSQRE ERLDYLEARL DEQNLNKESY
501: WWYLDLRRYG SVPHAGFGLG FERLVQFATG IDNIRDAIPF PRVPGSAEF

Best Arabidopsis Sequence Match ( AT4G17300.2 )
(BLAST)

001: MFQYEEEDSR NPKTVNDSIT MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF

Arabidopsis Description

NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.