Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021059.1-P | Field mustard | plastid | 88.08 | 91.99 |
| CDY50134 | Canola | plastid | 87.9 | 91.81 |
| CDY42978 | Canola | plastid | 87.56 | 91.3 |
| CDY58174 | Canola | plastid | 87.22 | 91.1 |
| Bra026243.1-P | Field mustard | plastid | 87.05 | 90.76 |
| CDY35583 | Canola | plastid | 83.65 | 87.68 |
| TraesCS2A01G231500.2 | Wheat | cytosol | 58.26 | 80.66 |
| VIT_00s0229g00020.t01 | Wine grape | plastid | 76.32 | 76.71 |
| Os07t0485400-01 | Rice | cytosol | 28.11 | 75.34 |
| KRH57405 | Soybean | plastid | 70.53 | 75.14 |
| KRH04132 | Soybean | plastid | 70.36 | 75.09 |
| Solyc03g019940.2.1 | Tomato | plastid | 72.91 | 74.96 |
| PGSC0003DMT400039341 | Potato | mitochondrion, plastid | 72.57 | 74.61 |
| TraesCS2D01G235900.1 | Wheat | mitochondrion | 66.78 | 73.96 |
| TraesCS2B01G255900.2 | Wheat | mitochondrion | 67.12 | 73.51 |
| HORVU2Hr1G049240.1 | Barley | mitochondrion | 66.44 | 72.9 |
| Zm00001d006377_P001 | Maize | mitochondrion | 67.8 | 72.5 |
| Zm00001d021507_P002 | Maize | plastid | 67.8 | 72.5 |
| KXG36232 | Sorghum | mitochondrion | 68.14 | 72.46 |
| GSMUA_Achr2P18500_001 | Banana | plasma membrane | 69.85 | 49.46 |
| AT1G70980.1 | Thale cress | cytosol | 46.17 | 47.46 |
| AT1G68420.1 | Thale cress | cytosol | 6.98 | 47.13 |
| AT5G56680.1 | Thale cress | cytosol | 44.8 | 45.98 |
| AT3G07420.1 | Thale cress | cytosol | 34.41 | 31.66 |
| AT4G31180.1 | Thale cress | cytosol | 20.44 | 21.51 |
| AT4G26870.1 | Thale cress | cytosol | 19.08 | 21.05 |
Protein Annotations
| KEGG:00970+6.1.1.22 | MapMan:17.2.3 | Gene3D:2.40.50.140 | EntrezGene:827443 | UniProt:A0A1P8B3X2 | ProteinID:AEE83874.1 |
| EMBL:AJ222644 | ProteinID:ANM66310.1 | ArrayExpress:AT4G17300 | EnsemblPlantsGene:AT4G17300 | RefSeq:AT4G17300 | TAIR:AT4G17300 |
| RefSeq:AT4G17300-TAIR-G | EnsemblPlants:AT4G17300.2 | EMBL:AY078967 | InterPro:Asn-tRNA-ligase | InterPro:Asp/Asn-tRNA-synth_IIb | Unigene:At.123 |
| ProteinID:CAB10511.1 | ProteinID:CAB78733.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004812 | GO:GO:0004816 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006418 | GO:GO:0006421 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016874 | GO:GO:0019538 | GO:GO:0048481 | InterPro:IPR006195 |
| HAMAP:MF_00534 | InterPro:NA-bd_OB-fold | InterPro:NA-bd_OB_tRNA | RefSeq:NP_001328216.1 | RefSeq:NP_193462.1 | Symbol:NS1 |
| PFAM:PF00152 | PFAM:PF01336 | PRINTS:PR01042 | PFscan:PS50862 | PANTHER:PTHR22594 | PANTHER:PTHR22594:SF44 |
| SUPFAM:SSF50249 | SUPFAM:SSF55681 | TIGRFAMs:TIGR00457 | UniParc:UPI00084851B2 | InterPro:aa-tRNA-synt_II | InterPro:aa-tRNA-synth_II |
| SEG:seg | : | : | : | : | : |
Description
NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
Coordinates
chr4:+:9681348..9684975
Molecular Weight (calculated)
66087.4 Da
IEP (calculated)
5.376
GRAVY (calculated)
-0.299
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MFQYEEEDSR NPKTVNDSIT MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.