CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026243.1-P	Field mustard	plastid	97.69	97.69
CDY35583	Canola	plastid	93.43	93.93
CDY50134	Canola	plastid	91.83	91.99
CDY58174	Canola	plastid	91.3	91.46
AT4G17300.2	Thale cress	cytosol, plastid	91.3	87.56
TraesCS2A01G231500.2	Wheat	cytosol	60.75	80.66
VIT_00s0229g00020.t01	Wine grape	plastid	78.69	75.86
Solyc03g019940.2.1	Tomato	plastid	76.02	74.96
PGSC0003DMT400039341	Potato	mitochondrion, plastid	75.67	74.61
KRH04132	Soybean	plastid	72.82	74.55
TraesCS2D01G235900.1	Wheat	mitochondrion	70.16	74.53
KRH57405	Soybean	plastid	72.82	74.41
KXG36232	Sorghum	mitochondrion	72.82	74.28
Zm00001d006377_P001	Maize	mitochondrion	72.29	74.13
TraesCS2B01G255900.2	Wheat	mitochondrion	70.52	74.07
Zm00001d021507_P002	Maize	plastid	72.11	73.95
Os07t0485400-01	Rice	cytosol	28.6	73.52
HORVU2Hr1G049240.1	Barley	mitochondrion	69.63	73.27
CDX88584	Canola	cytosol	47.42	50.47
GSMUA_Achr2P18500_001	Banana	plasma membrane	73.53	49.94
CDY08000	Canola	cytosol	13.5	49.03
CDY11908	Canola	plastid	49.56	48.52
CDY32876	Canola	cytosol, extracellular	48.67	47.65
CDY32766	Canola	cytosol	48.67	47.65
CDY53991	Canola	cytosol	43.87	45.91
CDY42212	Canola	cytosol	45.65	45.25
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	34.1	38.48
CDY38272	Canola	cytosol	30.02	35.5
CDY28051	Canola	cytosol	36.06	32.07
CDY35930	Canola	cytosol	35.88	31.86
CDY07998	Canola	cytosol	34.81	31.82
CDX74047	Canola	cytosol	34.46	31.14
CDX73541	Canola	cytosol	8.35	22.49
CDY35247	Canola	cytosol	20.07	21.36
CDX68726	Canola	extracellular	20.78	21.31
CDY28248	Canola	cytosol	20.6	21.13
CDX72297	Canola	cytosol	20.78	21.12
CDY13418	Canola	cytosol	20.6	21.01
CDY14727	Canola	cytosol	19.54	20.48
CDY06845	Canola	nucleus	15.1	16.77
CDX78190	Canola	cytosol	4.26	13.64

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	Gene3D:2.40.50.140	GO:A0A078I1M4	UniProt:A0A078I1M4	InterPro:Asn-tRNA-ligase
InterPro:Asp/Asn-tRNA-synth_IIb	EnsemblPlants:CDY42978	ProteinID:CDY42978	ProteinID:CDY42978.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00075760001	InterPro:IPR006195	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA
PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR22594	PANTHER:PTHR22594:SF44
SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0004EDC5CA	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II

Description

BnaA01g17760DBnaA01g17760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1M4]

Coordinates

chrLK032540:+:260477..263504

Molecular Weight (calculated)

63059.9 Da

IEP (calculated)

6.588

GRAVY (calculated)

-0.271

Length

563 amino acids

Sequence
(BLAST)

001: MAAAFLPATS LRLTPFSTLR FLSFFPISNP SHYSLFRPHR RPLFEDSPAN SRRRCFCTAT SVSPSSSDGK NNHEQRIGSK VGEFRKKLRI AEVKGGADEG
101: LGRVGQSLSV MGWVRTLRSQ SSVTFIEIND GSCLSNLQCV MNPDAEGYDQ VEAGSVLTGA SVCVQGTIVA SQGTKQKVEL KVHKIILVGK CDSSYPIQKK
201: RVSREFLRTK AHLRPRTNTF GAVARVRNTL AYATHKFFQE SGFVWVASPI ITASDCEGAG EQFCVTTLIP SSHETTNTSI DAIPKTKGGL VDWSQDFFGK
301: PAFLTVSGQL NGETYATALS DIYTFGPTFR AENSNTSRHL AEFWMIEPEL AFADLDDDMA CATAYLQYVV KYVLDNCKED MEFFDTWIEK GIIHRLSDVV
401: EKEFLQLSYT DAIELLLKAN KNFEFPVKWG LDLQSEHERY ITEEAFGGRP VIIRDYPKEI KAFYMRENDD GKTVAAMDML VPRVGELIGG SQREERLGVL
501: EARLDELKLD KESYWWYLDL RRYGSVPHAG FGLGFERLVQ FATGIDNIRD VIPFPRSPGS ADF

Best Arabidopsis Sequence Match ( AT4G17300.2 )
(BLAST)

001: MFQYEEEDSR NPKTVNDSIT MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF

Arabidopsis Description

NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.