CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29364282

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002799.1-P	Field mustard	cytosol	98.61	98.61
CDY32766	Canola	cytosol	98.61	98.61
CDX88584	Canola	cytosol	84.52	91.87
CDY11908	Canola	plastid	90.78	90.78
CDY42212	Canola	cytosol	86.26	87.32
CDY53991	Canola	cytosol	81.22	86.8
AT5G56680.1	Thale cress	cytosol	80.7	81.12
AT1G70980.1	Thale cress	cytosol	79.13	79.68
VIT_11s0016g02680.t01	Wine grape	cytosol	74.78	75.31
KRH60164	Soybean	endoplasmic reticulum	73.04	74.07
KRH41453	Soybean	cytosol, extracellular, nucleus	72.0	73.02
VIT_06s0004g07580.t01	Wine grape	cytosol	26.78	72.3
Os01t0372700-01	Rice	plastid	68.7	70.66
HORVU1Hr1G021130.2	Barley	plastid	69.22	70.32
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	47.13	70.03
VIT_12s0034g00320.t01	Wine grape	cytosol	36.52	70.0
TraesCS1A01G102600.1	Wheat	golgi	68.87	69.96
TraesCS1B01G113400.1	Wheat	cytosol	68.52	69.61
TraesCS1D01G094600.1	Wheat	cytosol	68.35	69.43
PGSC0003DMT400060831	Potato	cytosol, extracellular	69.91	69.31
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	69.74	69.14
EER90985	Sorghum	cytosol	66.78	68.45
EER95098	Sorghum	cytosol	66.43	68.09
Zm00001d009271_P003	Maize	cytosol	65.74	67.26
AT1G68420.1	Thale cress	cytosol	10.09	66.67
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.65	65.7
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.48	65.29
TraesCS2A01G584300.1	Wheat	cytosol	60.7	62.77
TraesCS7D01G028100.1	Wheat	cytosol	54.61	61.93
TraesCS7A01G031700.1	Wheat	cytosol	55.13	61.91
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	52.52	60.52
CDY38272	Canola	cytosol	42.61	51.47
KRH38090	Soybean	cytosol	21.74	50.61
CDY08000	Canola	cytosol	13.39	49.68
CDY58174	Canola	plastid	47.83	48.93
CDY50134	Canola	plastid	47.65	48.75
CDY42978	Canola	plastid	47.65	48.67
VIT_16s0013g00080.t01	Wine grape	cytosol	52.17	48.39
CDY35583	Canola	plastid	46.26	47.5
VIT_00s0120g00100.t01	Wine grape	cytosol	38.26	47.41
CDY35930	Canola	cytosol	41.74	37.85
CDY07998	Canola	cytosol	40.35	37.66
CDY28051	Canola	cytosol	41.39	37.6
CDX74047	Canola	cytosol	40.17	37.08
CDX73541	Canola	cytosol	9.57	26.32
CDY35247	Canola	cytosol	21.39	23.25
CDY28248	Canola	cytosol	21.57	22.59
CDX68726	Canola	extracellular	21.57	22.59
CDY13418	Canola	cytosol	21.39	22.28
CDX72297	Canola	cytosol	21.39	22.2
CDY14727	Canola	cytosol	20.7	22.16
CDY06845	Canola	nucleus	16.7	18.93
CDX78190	Canola	cytosol	5.74	18.75

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	GO:A0A078H4S9	UniProt:A0A078H4S9
InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	EnsemblPlants:CDY32876	ProteinID:CDY32876	ProteinID:CDY32876.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00053005001	InterPro:IPR000738	InterPro:IPR006195	HAMAP:MF_00534
InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF00458	PFAM:PF01336	PRINTS:PR01042
PFscan:PS50862	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SMART:SM00991	SUPFAM:SSF50249
SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0004EF10D6	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

BnaC09g33230DBnaC09g33230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4S9]

Coordinates

chrLK032301:+:168268..170721

Molecular Weight (calculated)

63630.2 Da

IEP (calculated)

4.899

GRAVY (calculated)

-0.205

Length

575 amino acids

Sequence
(BLAST)

001: MGGDIPPPVD ELAAVSLTND EASSSTVQKA RFSDRVRIQS ILGRPDGGAG LAGQKVRISG WVKTGREQGK GAFAFLEVND GSCPANLQVM VDASVSDLSK
101: LIATGTCVTV DGYLKLPPEG KGTKQKIELS VVEVIDLGTV DPGTYPIPKT KLTLERLREF LHLRARTNSI SAIARIRHAL AIATHTFFDE EGFLYVQTPI
201: ITTSDCEGAG EMFQVTTLIS TTEKLERELI ENPPPTEADV EAARVVVKER GEAVAELKAA KASKEAILAS VAELNDAKAN FAATEARSRL KPGLPKVDGK
301: IDYSQDFFGR QAFLTVSGQL QVETYACGLS DVYTFGPTFR AENSHTSRHL AEFWMVEPEL AFADLEDDMN CAEAYVKYMC KWLLEKRYDD MELMAKNFDK
401: GCIDRLKLVA STPFGRLTYT EAIKILEEAV AKGKNFDNAV EWGIDLASEH ERYLTEVVFQ KPLIVYNYPK GIKAFYMRLN DDGKTVAAMD VLVPKVGELI
501: GGSQREERID VIMERLEEIG LPVEPYEWYL DLRRYGTAKH SGFGLGFERM VLFATGMDNI RDVIPFPRYP GRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.