Factsheet for Solyc10g080710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060831	Potato	cytosol, extracellular	98.62	98.62
VIT_11s0016g02680.t01	Wine grape	cytosol	76.72	77.93
VIT_12s0034g00320.t01	Wine grape	cytosol	37.93	73.33
KRH60164	Soybean	endoplasmic reticulum	71.38	73.02
CDX88584	Canola	cytosol	66.55	72.97
VIT_06s0004g07580.t01	Wine grape	cytosol	26.72	72.77
Os01t0372700-01	Rice	plastid	69.83	72.45
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	47.93	71.83
Bra006861.1-P	Field mustard	cytosol	68.62	71.71
EER95098	Sorghum	cytosol	69.31	71.66
KRH41453	Soybean	cytosol, extracellular, nucleus	70.0	71.6
EER90985	Sorghum	cytosol	69.14	71.48
TraesCS1A01G102600.1	Wheat	golgi	69.48	71.2
TraesCS1D01G094600.1	Wheat	cytosol	69.31	71.02
HORVU1Hr1G021130.2	Barley	plastid	69.31	71.02
TraesCS1B01G113400.1	Wheat	cytosol	69.14	70.85
Zm00001d009271_P003	Maize	cytosol	68.62	70.82
AT1G70980.1	Thale cress	cytosol	69.31	70.4
CDY32766	Canola	cytosol	69.48	70.09
Bra002799.1-P	Field mustard	cytosol	69.48	70.09
CDY11908	Canola	plastid	69.31	69.91
AT5G56680.1	Thale cress	cytosol	68.79	69.76
CDY32876	Canola	cytosol, extracellular	69.14	69.74
CDY42212	Canola	cytosol	64.83	66.2
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.59	66.12
CDY53991	Canola	cytosol	61.21	65.99
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.41	65.7
TraesCS2A01G584300.1	Wheat	cytosol	60.86	63.49
TraesCS7D01G028100.1	Wheat	cytosol	54.31	62.13
TraesCS7A01G031700.1	Wheat	cytosol	53.79	60.94
AT1G68420.1	Thale cress	cytosol	8.62	57.47
KRH38090	Soybean	cytosol	22.24	52.23
VIT_00s0120g00100.t01	Wine grape	cytosol	41.21	51.51
Bra002754.1-P	Field mustard	cytosol	52.59	51.09
VIT_16s0013g00080.t01	Wine grape	cytosol	54.48	50.97
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	43.79	50.9
CDY38272	Canola	cytosol	37.76	46.01
Solyc03g019940.2.1	Tomato	plastid	44.31	45.01
Solyc09g057950.2.1	Tomato	cytosol	40.34	38.42
Solyc05g056250.2.1	Tomato	plastid	20.17	21.51

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	Gene3D:2.40.50.140	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	UniProt:K4D2W1	HAMAP:MF_00534
InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862
PANTHER:PTHR22594	PANTHER:PTHR22594:SF34	SUPFAM:SSF50249	SUPFAM:SSF55681	EnsemblPlantsGene:Solyc10g080710.1	EnsemblPlants:Solyc10g080710.1.1
TIGRFAMs:TIGR00457	UniParc:UPI0002769606	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:61923314..61927285

Molecular Weight (calculated)

64678.6 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.236

Length

580 amino acids

Sequence
(BLAST)

001: MSVDSAPPVE KLTLTDVVEE ARFSQRVPIC SIVGRTDGGA GLAGNVVKIG GWVKTGREQG KGSFAFLEVN DGSCPGNLQV IVDASVHKLG DLVLTGTCVH
101: VEGELKVPPE GAKQKVELRV QKVISVGTVD AAKYPLPKTK LTLEFLRDVV HLRSRTNTIS AVARIRNALA YATHTFFQNN GFLYIHTPII TTSDCEGAGE
201: MFQVTSLISE AEKLEKELKE NPAPSESDTQ AAEKLAKEKG EVVAQLKASK ASMDKTDPNI ADINKKISAA VAELQRAKEN LLKLQERSKL GERYRLSAGI
301: PKKDGKIDYS EDFFGRQAFL TVSGQLQVET YACALSSVYT FGPTFRAEQS HTTRHLAEFW MVEPEIAFAD IQDDMNCAEA YVKFLCQWLL DHCLDDMEFM
401: TKFVDKDALS RLRMVASSNC HRITYTEAID ILEVAAKVKK FENKVEWGID LASEHERYLT EEHFKAPVIV FNYPKGIKAF YMKVNEDNKT VAAMDLLVPK
501: VGELIGGSQR EENYEVLRSR ILDLGLPLEP YEWYLDLRRY GTVKHSGFGL GFERMILFAT GIENIRDVIP FPRYPGRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.