Factsheet for VIT_06s0004g07580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	96.71	85.12
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	96.24	84.71
VIT_12s0034g00320.t01	Wine grape	cytosol	95.31	67.67
AT1G68420.1	Thale cress	cytosol	22.07	54.02
VIT_11s0016g02680.t01	Wine grape	cytosol	90.61	33.8
VIT_16s0013g00080.t01	Wine grape	cytosol	93.9	32.26
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	58.22	32.04
Bra006861.1-P	Field mustard	cytosol	73.71	28.29
KRH60164	Soybean	endoplasmic reticulum	73.24	27.51
Os01t0372700-01	Rice	plastid	71.83	27.37
KRH41453	Soybean	cytosol, extracellular, nucleus	72.77	27.34
CDY11908	Canola	plastid	73.71	27.3
CDY32766	Canola	cytosol	73.24	27.13
Bra002799.1-P	Field mustard	cytosol	73.24	27.13
CDX88584	Canola	cytosol	66.67	26.84
CDY32876	Canola	cytosol, extracellular	72.3	26.78
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	72.77	26.72
PGSC0003DMT400060831	Potato	cytosol, extracellular	72.77	26.72
HORVU1Hr1G021130.2	Barley	plastid	70.42	26.5
AT1G70980.1	Thale cress	cytosol	70.42	26.27
AT5G56680.1	Thale cress	cytosol	70.42	26.22
EER95098	Sorghum	cytosol	69.01	26.2
EER90985	Sorghum	cytosol	69.01	26.2
TraesCS1A01G102600.1	Wheat	golgi	69.48	26.15
TraesCS1D01G094600.1	Wheat	cytosol	69.48	26.15
Zm00001d009271_P003	Maize	cytosol	68.54	25.98
TraesCS1B01G113400.1	Wheat	cytosol	69.01	25.97
CDY53991	Canola	cytosol	64.79	25.65
CDY42212	Canola	cytosol	66.67	25.0
TraesCS2A01G584300.1	Wheat	cytosol	60.09	23.02
TraesCS7A01G031700.1	Wheat	cytosol	50.23	20.9
TraesCS7D01G028100.1	Wheat	cytosol	48.83	20.51
VIT_00s2558g00010.t01	Wine grape	cytosol	25.35	20.0
VIT_00s0120g00100.t01	Wine grape	cytosol	41.31	18.97
CDY38272	Canola	cytosol	38.03	17.02
Bra002754.1-P	Field mustard	cytosol	46.01	16.42
VIT_00s0229g00020.t01	Wine grape	plastid	44.13	16.1
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	33.8	14.43
KRH38090	Soybean	cytosol	10.33	8.91
VIT_04s0008g03010.t01	Wine grape	cytosol	17.37	6.8
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	3.29	4.83

Protein Annotations

Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:3.30.930.10	ProteinID:CCB43426	ProteinID:CCB43426.1	ncoils:Coil
UniProt:F6GUH2	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000738	PFAM:PF00152
PFAM:PF00458	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF44	SUPFAM:SSF55681	UniParc:UPI000210AC2B
ArrayExpress:VIT_06s0004g07580	EnsemblPlantsGene:VIT_06s0004g07580	EnsemblPlants:VIT_06s0004g07580.t01	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	:

Description

No Description!

Coordinates

chr6:-:8359688..8360329

Molecular Weight (calculated)

24159.8 Da

IEP (calculated)

5.972

GRAVY (calculated)

-0.391

Length

213 amino acids

Sequence
(BLAST)

001: MQGEAVAQLK SAKASKGEIT ASVAELNKAK ENLSRLEERS KLKPGIPKKD GKIDYSQDFF ARQAFLTVSG QLLVETYACA IGSVYTFGPT FRAEHSHTSR
101: HLAEFWMVEP EIAFADLKDD MNCAEAYVKF LCQWLPDNCI DDMEFMAKNF DKGSIDHIRM VASMPFERIS YAEAIKLLEE AVKKDKKFEN KVEWGIDLAS
201: EHDQILASRQ RHV

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.