Factsheet for VIT_00s2558g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0034g00320.t01	Wine grape	cytosol	32.59	29.33
KRH07367	Soybean	cytosol	65.19	28.21
PGSC0003DMT400056710	Potato	cytosol	62.96	28.01
KRH66191	Soybean	plastid	63.7	26.92
Solyc09g057950.2.1	Tomato	cytosol	59.63	26.44
VIT_06s0004g07580.t01	Wine grape	cytosol	20.0	25.35
CDY28051	Canola	cytosol	58.52	24.96
AT3G07420.1	Thale cress	cytosol	58.89	24.92
Bra029647.1-P	Field mustard	cytosol	58.52	24.92
CDY35930	Canola	cytosol	58.15	24.76
CDY07998	Canola	cytosol	55.56	24.35
Bra001250.1-P	Field mustard	cytosol	54.81	23.76
CDX74047	Canola	cytosol	54.44	23.6
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	20.74	23.14
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	20.74	23.14
GSMUA_AchrUn_...	Banana	cytosol	46.67	22.34
VIT_11s0016g02680.t01	Wine grape	cytosol	47.04	22.24
VIT_16s0013g00080.t01	Wine grape	cytosol	42.59	18.55
VIT_00s0120g00100.t01	Wine grape	cytosol	31.85	18.53
Os12t0414500-01	Rice	plasma membrane	41.85	18.37
GSMUA_Achr8P31970_001	Banana	mitochondrion	34.44	18.31
VIT_00s0229g00020.t01	Wine grape	plastid	31.48	14.55
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	4.07	7.59
VIT_04s0008g03010.t01	Wine grape	cytosol	14.44	7.17
CDY08000	Canola	cytosol	1.48	2.58

Protein Annotations

EntrezGene:100266075	wikigene:100266075	EntrezGene:100854003	wikigene:100854003	MapMan:17.2.3	EMBL:AM427506
ProteinID:CAN82202	ProteinID:CAN82202.1	ProteinID:CCB45373	ProteinID:CCB45373.1	ncoils:Coil	UniProt:F6GZI7
EMBL:FN595165	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EntrezGene:LOC100266075	wikigene:LOC100266075	EntrezGene:LOC100854003
wikigene:LOC100854003	PFAM:PF00152	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF55681	UniParc:UPI0002108FAD
ArrayExpress:VIT_00s2558g00010	EnsemblPlantsGene:VIT_00s2558g00010	EnsemblPlants:VIT_00s2558g00010.t01	RefSeq:XP_002264582	RefSeq:XP_002264582.2	RefSeq:XP_003635664
RefSeq:XP_003635664.1	InterPro:aa-tRNA-synt_II	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:42348522..42349485

Molecular Weight (calculated)

30599.8 Da

IEP (calculated)

7.690

GRAVY (calculated)

-0.301

Length

270 amino acids

Sequence
(BLAST)

001: MPTGTCILAE GVLKLPPVEG KHAIELQAEK ILHIGTVDRE KYPLSKKRLP IDSLRDFSHF KPRTTTVASV MRMRDALTHA THNFFRNNEF LYVQVPIITT
101: TDAEGFSERF IVTTLLGKSA EKVEPKSVHE IEGVSLEALK AAIKEKSNLV EELKRSDSNK EALVAALWDL RKTNELAQQL ESREKLHPGA SLNKADEINF
201: SKDFFSRETY LTVSGRLHLQ SYACSLGNVY SFGPRFRAES MKHVAEMWMV ELEMAFSQLE VRGLCYFSGY

Best Arabidopsis Sequence Match ( AT3G07420.2 )
(BLAST)

001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLRYCFCQ LSLCFKIRFK FSVYRSMLQL SD

Arabidopsis Description

SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.