Factsheet for VIT_06s0080g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	97.11	97.11
VIT_06s0004g07580.t01	Wine grape	cytosol	84.71	96.24
VIT_12s0034g00320.t01	Wine grape	cytosol	88.84	71.67
AT1G68420.1	Thale cress	cytosol	19.01	52.87
VIT_11s0016g02680.t01	Wine grape	cytosol	82.23	34.85
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	54.13	33.85
VIT_16s0013g00080.t01	Wine grape	cytosol	85.95	33.55
Bra006861.1-P	Field mustard	cytosol	66.94	29.19
Os01t0372700-01	Rice	plastid	65.7	28.44
KRH60164	Soybean	endoplasmic reticulum	66.53	28.4
KRH41453	Soybean	cytosol, extracellular, nucleus	66.53	28.4
CDY11908	Canola	plastid	66.94	28.17
CDY32766	Canola	cytosol	66.53	28.0
Bra002799.1-P	Field mustard	cytosol	66.53	28.0
CDX88584	Canola	cytosol	60.74	27.79
HORVU1Hr1G021130.2	Barley	plastid	64.88	27.74
CDY32876	Canola	cytosol, extracellular	65.7	27.65
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	66.12	27.59
PGSC0003DMT400060831	Potato	cytosol, extracellular	66.12	27.59
TraesCS1A01G102600.1	Wheat	golgi	64.05	27.39
TraesCS1D01G094600.1	Wheat	cytosol	64.05	27.39
EER95098	Sorghum	cytosol	63.22	27.27
EER90985	Sorghum	cytosol	63.22	27.27
TraesCS1B01G113400.1	Wheat	cytosol	63.64	27.21
Zm00001d009271_P003	Maize	cytosol	62.81	27.05
AT1G70980.1	Thale cress	cytosol	63.64	26.97
AT5G56680.1	Thale cress	cytosol	63.64	26.92
CDY53991	Canola	cytosol	59.5	26.77
CDY42212	Canola	cytosol	61.57	26.23
TraesCS2A01G584300.1	Wheat	cytosol	56.2	24.46
TraesCS7A01G031700.1	Wheat	cytosol	47.52	22.46
TraesCS7D01G028100.1	Wheat	cytosol	46.28	22.09
VIT_00s2558g00010.t01	Wine grape	cytosol	23.14	20.74
VIT_00s0120g00100.t01	Wine grape	cytosol	38.84	20.26
CDY38272	Canola	cytosol	35.54	18.07
VIT_00s0229g00020.t01	Wine grape	plastid	41.74	17.29
Bra002754.1-P	Field mustard	cytosol	41.32	16.75
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	30.17	14.63
KRH38090	Soybean	cytosol	12.4	12.15
VIT_04s0008g03010.t01	Wine grape	cytosol	17.36	7.72
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	2.89	4.83

Protein Annotations

Gene3D:1.10.287.10	EntrezGene:100855259	wikigene:100855259	MapMan:17.2.3	Gene3D:3.30.930.10	EMBL:AM483425
ProteinID:CAN62126	ProteinID:CAN62126.1	ProteinID:CCB51653	ProteinID:CCB51653.1	ncoils:Coil	UniProt:F6HHF7
EMBL:FN595757	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004812
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000738	EntrezGene:LOC100855259	wikigene:LOC100855259	PFAM:PF00152
PFAM:PF00458	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF44	InterPro:S15_NS1_RNA-bd	SMART:SM00991
SUPFAM:SSF47060	SUPFAM:SSF55681	UniParc:UPI0002108209	ArrayExpress:VIT_06s0080g00530	EnsemblPlantsGene:VIT_06s0080g00530	EnsemblPlants:VIT_06s0080g00530.t01
InterPro:WHEP-TRS_dom	RefSeq:XP_003632291	RefSeq:XP_003632291.1	RefSeq:XP_010651880.1	InterPro:aa-tRNA-synt_II	:

Description

No Description!

Coordinates

chr6:-:20538625..20539353

Molecular Weight (calculated)

27182.6 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.272

Length

242 amino acids

Sequence
(BLAST)

001: MGSRLCSREL GFGQPALCSQ CLLRAVGLLM QGEAVAQLKS AKASKGEITA SVAELNKAKE NLSRLEERSK LKPGIPQKDG KIDYSQDFFA RQAFFNVSGQ
101: LQVETYACAI GSVYTFGPTF RAEHSHTSRH LAEFWMVEPE IAFADLKDDM NCAKAYVKFL CQWLPDNCID DMEFMAKIFD KGSIDHLRMV ASMPFERISY
201: AEAIKLLEEA VKKDKKFENK VEWGIDLASE HDQILASRQG HV

Best Arabidopsis Sequence Match ( AT1G70980.1 )
(BLAST)

001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L

Arabidopsis Description

SYNC3Asparagine--tRNA ligase, cytoplasmic 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.