CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006861.1-P	Field mustard	cytosol	100.0	95.32
CDY11908	Canola	plastid	99.24	91.3
CDY32766	Canola	cytosol	92.63	85.22
CDY32876	Canola	cytosol, extracellular	91.87	84.52
CDY42212	Canola	cytosol	84.31	78.52
CDY53991	Canola	cytosol	78.83	77.51
AT1G70980.1	Thale cress	cytosol	82.8	76.71
AT5G56680.1	Thale cress	cytosol	82.04	75.87
VIT_11s0016g02680.t01	Wine grape	cytosol	77.69	71.98
KRH60164	Soybean	endoplasmic reticulum	74.29	69.31
KRH41453	Soybean	cytosol, extracellular, nucleus	73.53	68.61
Os01t0372700-01	Rice	plastid	71.83	67.98
PGSC0003DMT400060831	Potato	cytosol, extracellular	73.35	66.9
VIT_06s0004g07580.t01	Wine grape	cytosol	26.84	66.67
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	48.77	66.67
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	72.97	66.55
HORVU1Hr1G021130.2	Barley	plastid	70.89	66.25
TraesCS1A01G102600.1	Wheat	golgi	70.7	66.08
EER90985	Sorghum	cytosol	69.94	65.95
TraesCS1B01G113400.1	Wheat	cytosol	70.51	65.9
EER95098	Sorghum	cytosol	69.57	65.6
TraesCS1D01G094600.1	Wheat	cytosol	70.13	65.55
VIT_12s0034g00320.t01	Wine grape	cytosol	37.05	65.33
Zm00001d009271_P003	Maize	cytosol	68.81	64.77
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.79	60.74
TraesCS2A01G584300.1	Wheat	cytosol	63.71	60.61
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.41	59.92
AT1G68420.1	Thale cress	cytosol	9.83	59.77
TraesCS7D01G028100.1	Wheat	cytosol	56.33	58.78
TraesCS7A01G031700.1	Wheat	cytosol	56.71	58.59
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	52.17	55.31
CDY08000	Canola	cytosol	14.56	49.68
VIT_00s0120g00100.t01	Wine grape	cytosol	43.1	49.14
KRH38090	Soybean	cytosol	22.87	48.99
CDY58174	Canola	plastid	50.85	47.86
CDY50134	Canola	plastid	50.47	47.51
CDY42978	Canola	plastid	50.47	47.42
CDY35583	Canola	plastid	49.53	46.79
VIT_16s0013g00080.t01	Wine grape	cytosol	54.63	46.61
CDY38272	Canola	cytosol	41.78	46.43
CDY07998	Canola	cytosol	41.02	35.23
CDY35930	Canola	cytosol	42.16	35.17
CDY28051	Canola	cytosol	41.97	35.07
CDX74047	Canola	cytosol	40.83	34.67
CDX73541	Canola	cytosol	10.21	25.84
CDX68726	Canola	extracellular	23.06	22.22
CDY28248	Canola	cytosol	23.06	22.22
CDY35247	Canola	cytosol	21.74	21.74
CDY13418	Canola	cytosol	22.12	21.2
CDX72297	Canola	cytosol	22.12	21.12
CDY14727	Canola	cytosol	21.36	21.04
CDY06845	Canola	nucleus	16.82	17.55
CDX78190	Canola	cytosol	4.91	14.77

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	GO:A0A078DJ51	InterPro:Asn-tRNA-ligase
InterPro:Asp/Asn-tRNA-synth_IIb	EnsemblPlants:CDX88584	ProteinID:CDX88584	ProteinID:CDX88584.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00148617001	InterPro:IPR000738	InterPro:IPR006195	HAMAP:MF_00534	InterPro:NA-bd_OB-fold
InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF00458	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862
PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SMART:SM00991	SUPFAM:SSF50249	SUPFAM:SSF55681
UniParc:UPI0004EF2FE3	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

BnaA03g10650D

Coordinates

chrLK031856:+:32837..35415

Molecular Weight (calculated)

58913.6 Da

IEP (calculated)

5.098

GRAVY (calculated)

-0.230

Length

529 amino acids

Sequence
(BLAST)

001: MADEVTVQKA RFSDRVRIRS ILGRPDGGAG LAGQKVRISG WVKTGREQGK GAFAFLEVND GSCPANLQVM VDASVSDLSK LVATGTCVTV DGCLKIPPEG
101: KGTKQKVELS VVEVVDVGTV DTATYPIPKT KLTLERLREF PHLRSRTNSI SAIARIRHAL AIATHTFFDE EGFLYIQTPI ITTSDCEGAG EMFQVTTLIS
201: HTEKLERDLI ENPPPTEADV EAARLIVKAR GEAVAHLKSA KASKETITAS VAELNEAKAS LSRTEERSKL KPGLPKLDGK IDYTQDFFGR QAFLTVSGQL
301: QVETYACGLS DVYTFGPTFR AENSHTSRHL AEFWMVEPEL AFADLEDDMN CAEAYVRYMC KWLLEKRYDD MELMAAIELL EEAVGKGKEF VNPVEWGIDL
401: ASEHERYLTE VVFQKPLIVY NYPKGIKAFY MRLNDDGKTV AAMDVLVPKV GELIGGSQRE ERIDVIMERI EEMGLPVEPY EWYLDLRRYG TAKHSGFGLG
501: FERMVLFATG MDNIRDVIPF PRYPGRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.