CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89844
CDY18205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07420.1	CDX89844	AT1G04100.1	21798944
AT3G07420.1	CDY18205	AT1G04100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029647.1-P	Field mustard	cytosol	96.52	96.37
CDY35930	Canola	cytosol	95.1	94.95
CDY07998	Canola	cytosol	81.67	83.93
CDY08000	Canola	cytosol	20.54	83.87
CDX74047	Canola	cytosol	81.2	82.5
AT3G07420.1	Thale cress	cytosol	81.52	80.88
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	14.06	61.38
VIT_00s2558g00010.t01	Wine grape	cytosol	24.96	58.52
PGSC0003DMT400056710	Potato	cytosol	51.34	53.54
Solyc09g057950.2.1	Tomato	cytosol	50.24	52.22
KRH07367	Soybean	cytosol	50.55	51.28
KRH66191	Soybean	plastid	51.03	50.55
GSMUA_AchrUn_...	Banana	cytosol	41.07	46.1
GSMUA_Achr8P31970_001	Banana	mitochondrion	34.91	43.5
CDX88584	Canola	cytosol	35.07	41.97
CDY32766	Canola	cytosol	37.76	41.57
CDY32876	Canola	cytosol, extracellular	37.6	41.39
CDY11908	Canola	plastid	36.97	40.7
Os12t0414500-01	Rice	plasma membrane	39.34	40.49
CDY42212	Canola	cytosol	36.18	40.32
CDY53991	Canola	cytosol	34.12	40.15
CDY50134	Canola	plastid	32.23	36.3
CDY58174	Canola	plastid	32.23	36.3
CDY42978	Canola	plastid	32.07	36.06
CDY35583	Canola	plastid	31.6	35.71
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	26.07	33.07
CDY38272	Canola	cytosol	24.8	32.98
CDX78190	Canola	cytosol	6.16	22.16
CDX73541	Canola	cytosol	7.27	22.01
CDX68726	Canola	extracellular	16.9	19.49
CDY35247	Canola	cytosol	16.27	19.47
CDY28248	Canola	cytosol	16.75	19.31
CDY13418	Canola	cytosol	16.59	19.02
CDX72297	Canola	cytosol	16.59	18.95
CDY14727	Canola	cytosol	15.96	18.81
CDY06845	Canola	nucleus	11.53	14.4

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	GO:A0A078GRL7	UniProt:A0A078GRL7	InterPro:Asn-tRNA-ligase	EnsemblPlants:CDY28051
ProteinID:CDY28051	ProteinID:CDY28051.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00038991001
PFAM:PF00152	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0004EE3F20
InterPro:aa-tRNA-synt_II	SEG:seg	:	:	:	:

Description

BnaC05g44530DBnaC05g44530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRL7]

Coordinates

chrLK032213:+:387208..389612

Molecular Weight (calculated)

70649.5 Da

IEP (calculated)

8.166

GRAVY (calculated)

-0.322

Length

633 amino acids

Sequence
(BLAST)

001: MDSHGKTHHE DASPNLIPLS KYSNRVELRT LLERSDGGAG FFGKRVVVGG WVKSSRAVKK ESLPPPPAIF VPPPSSSGSQ ASPTPSVSCT EIINSKMNIF
101: RKLFDVLSGG GKTYPIFEKH DLAGQKATSP PEYIIHFQIN DGSSVSTLQV IVDSVLSSVP ATQLMSLGTC IVAEGVLRQP LAASAKHVIE LEAEKLLHVG
201: TVDPDKYPLS KKQLPLHMLR DHSHFRPRTT TVGSVTRVHS ALTLASHTFL QNNGFQYVQV PVITTTGAGE MFRVTTLLGE DDDKEEKKHV NEKDGVSIDT
301: VKAAVKEKTR LIDQLKRTDS NREAVVAAVH DLKKTSDLAS QLEMKQRPKA SATMIKPEKV DFSKDFFGCE AYLTVSGRLH LESYASALGK VYTFGPRFIA
401: DKIDSTRHLA EMWNVETEIA FSELDDAMDC AAEFFKFLCK YLLENRHEDM KFISKRVDKT ITIRLEATAS SSILRFSYSE AISVLQKAST RTFETKPEWG
501: VALTEEHLSY LTDEIYKGCV IIHSYPKEVK PFYTRLNDDK KTVAAFDLVV PKVGVVITGS QNEERFEILD ARIREDGLTT REKYEWYLDL RRHGTVKHSG
601: ISLRMEHMLL FATGLPDIKD TVPFPRSWGK ANN

Best Arabidopsis Sequence Match ( AT3G07420.1 )
(BLAST)

001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN

Arabidopsis Description

SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.