CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006861.1-P	Field mustard	cytosol	95.83	99.28
CDX88584	Canola	cytosol	91.3	99.24
CDY32766	Canola	cytosol	91.48	91.48
CDY32876	Canola	cytosol, extracellular	90.78	90.78
CDY42212	Canola	cytosol	83.13	84.15
CDY53991	Canola	cytosol	78.26	83.64
AT5G56680.1	Thale cress	cytosol	81.39	81.82
AT1G70980.1	Thale cress	cytosol	80.17	80.74
VIT_11s0016g02680.t01	Wine grape	cytosol	75.65	76.18
KRH60164	Soybean	endoplasmic reticulum	72.7	73.72
VIT_06s0004g07580.t01	Wine grape	cytosol	27.3	73.71
KRH41453	Soybean	cytosol, extracellular, nucleus	72.0	73.02
Os01t0372700-01	Rice	plastid	69.74	71.74
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	47.83	71.06
HORVU1Hr1G021130.2	Barley	plastid	69.91	71.02
TraesCS1A01G102600.1	Wheat	golgi	69.57	70.67
VIT_12s0034g00320.t01	Wine grape	cytosol	36.7	70.33
TraesCS1B01G113400.1	Wheat	cytosol	69.22	70.32
TraesCS1D01G094600.1	Wheat	cytosol	69.04	70.14
PGSC0003DMT400060831	Potato	cytosol, extracellular	70.43	69.83
EER90985	Sorghum	cytosol	67.65	69.34
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	69.91	69.31
EER95098	Sorghum	cytosol	67.3	68.98
Zm00001d009271_P003	Maize	cytosol	66.61	68.15
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	28.17	66.94
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	28.0	66.53
AT1G68420.1	Thale cress	cytosol	9.91	65.52
TraesCS2A01G584300.1	Wheat	cytosol	61.91	64.03
TraesCS7D01G028100.1	Wheat	cytosol	54.78	62.13
TraesCS7A01G031700.1	Wheat	cytosol	55.13	61.91
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	51.65	59.52
CDY38272	Canola	cytosol	41.74	50.42
KRH38090	Soybean	cytosol	21.57	50.2
CDY58174	Canola	plastid	48.87	50.0
CDY50134	Canola	plastid	48.7	49.82
CDY08000	Canola	cytosol	13.39	49.68
CDY42978	Canola	plastid	48.52	49.56
VIT_16s0013g00080.t01	Wine grape	cytosol	53.04	49.19
VIT_00s0120g00100.t01	Wine grape	cytosol	39.65	49.14
CDY35583	Canola	plastid	47.3	48.57
CDY28051	Canola	cytosol	40.7	36.97
CDY35930	Canola	cytosol	40.7	36.91
CDY07998	Canola	cytosol	39.3	36.69
CDX74047	Canola	cytosol	39.13	36.12
CDX73541	Canola	cytosol	9.57	26.32
CDX68726	Canola	extracellular	22.09	23.13
CDY28248	Canola	cytosol	22.09	23.13
CDY35247	Canola	cytosol	21.22	23.06
CDY13418	Canola	cytosol	21.74	22.64
CDX72297	Canola	cytosol	21.57	22.38
CDY14727	Canola	cytosol	20.7	22.16
CDY06845	Canola	nucleus	16.87	19.13
CDX78190	Canola	cytosol	5.74	18.75

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	GO:A0A078FII3	UniProt:A0A078FII3
InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	EnsemblPlants:CDY11908	ProteinID:CDY11908	ProteinID:CDY11908.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00060748001	InterPro:IPR000738	InterPro:IPR006195	HAMAP:MF_00534
InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF00458	PFAM:PF01336	PRINTS:PR01042
PFscan:PS50862	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SMART:SM00991	SUPFAM:SSF50249
SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0004EDB897	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

BnaC03g13340DBnaC03g13340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FII3]

Coordinates

chrLK032015:-:399116..401907

Molecular Weight (calculated)

63830.5 Da

IEP (calculated)

5.370

GRAVY (calculated)

-0.234

Length

575 amino acids

Sequence
(BLAST)

001: MADEVPPPAH QVPAVSISSD GISSSTVQKA RFSDRVRIRS ILGRPDGGAG LAGQKVRISG WVKTGREQGK GAFAFLEVND GSCPANLQVM VDASVSDLTK
101: LVATGTCVTV DGCLKIPPEG KGTKQKVELS VVEVIDVGTV DTATYPIPKT KLTLERLREF PHLRSRTNSI SAIARIRHAL AIATHTFFDE EGFLYIQTPI
201: ITTSDCEGAG EMFQVTTLIS HTEKLERDLI ENPPPTEADV EAARLIVKAR GEAVAQLKSA KASKETITAS VAELNEAKAS LSRTEERSRL KPGLPKLDGK
301: IDYTQDFFGR QAFLTVSGQL QVETYACGLS DVYTFGPTFR AENSHTSRHL AEFWMVEPEL AFADLEDDMN CAEAYVRYMC KWLLEKRYDD MELMAKNFDK
401: GCIDRLKLVA STPFGRLTYT KAIELLEEAV GKGKEFVNPV EWGIDLASEH ERYLTEVVFQ KPLIVYNYPK GIKAFYMRLN DDGKTVAAMD VLVPKVGELI
501: GGSQREERID VIMERIEEMG LPVEPYEWYL DLRRYGTAKH SGFGLGFERM VLFATGMDNI RDVIPFPRYP GRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.