Factsheet for TraesCS7D01G028100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G031700.1	Wheat	cytosol	94.48	93.55
Os01t0372700-01	Rice	plastid	73.37	66.55
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	50.69	66.41
TraesCS1D01G094600.1	Wheat	cytosol	73.96	66.25
EER95098	Sorghum	cytosol	72.39	65.42
Zm00001d009271_P003	Maize	cytosol	72.39	65.3
EER90985	Sorghum	cytosol	72.19	65.24
VIT_11s0016g02680.t01	Wine grape	cytosol	64.3	57.09
KRH60164	Soybean	endoplasmic reticulum	63.71	56.97
KRH41453	Soybean	cytosol, extracellular, nucleus	63.31	56.61
Bra006861.1-P	Field mustard	cytosol	61.93	56.58
CDX88584	Canola	cytosol	58.78	56.33
AT5G56680.1	Thale cress	cytosol	63.51	56.29
AT1G70980.1	Thale cress	cytosol	62.72	55.69
CDY11908	Canola	plastid	62.13	54.78
Bra002799.1-P	Field mustard	cytosol	61.93	54.61
CDY32766	Canola	cytosol	61.93	54.61
CDY32876	Canola	cytosol, extracellular	61.93	54.61
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	62.13	54.31
PGSC0003DMT400060831	Potato	cytosol, extracellular	61.93	54.14
AT1G68420.1	Thale cress	cytosol	9.07	52.87
CDY42212	Canola	cytosol	57.99	51.76
CDY53991	Canola	cytosol	54.64	51.49
VIT_06s0004g07580.t01	Wine grape	cytosol	20.51	48.83
VIT_12s0034g00320.t01	Wine grape	cytosol	28.6	48.33
TraesCS2D01G235900.1	Wheat	mitochondrion	49.7	47.55
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	22.29	46.69
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	22.09	46.28
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	44.38	45.09
Bra002754.1-P	Field mustard	cytosol	47.34	40.2
CDY38272	Canola	cytosol	36.69	39.08
KRH38090	Soybean	cytosol	17.95	36.84
VIT_16s0013g00080.t01	Wine grape	cytosol	44.77	36.61
VIT_00s0120g00100.t01	Wine grape	cytosol	31.95	34.91
TraesCS5D01G333800.2	Wheat	cytosol	23.27	21.22
TraesCS5D01G165200.1	Wheat	cytosol, golgi	22.09	20.59

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	Gene3D:2.40.50.140	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR006195	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	PFAM:PF00152	PRINTS:PR01042
PFscan:PS50862	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457
EnsemblPlantsGene:TraesCS7D01G028100	EnsemblPlants:TraesCS7D01G028100.1	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	TIGR:cd00776	TIGR:cd04318
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:13675389..13677356

Molecular Weight (calculated)

56240.5 Da

IEP (calculated)

6.075

GRAVY (calculated)

-0.142

Length

507 amino acids

Sequence
(BLAST)

001: MAASTMAAPT TDHLEPPMAA SRTPIRAILA ATDALAGERV VVGGWVRAGR VQCGGTMAFL AVNDGSCHAS LQLVVEAARV THPPLDRLAA TGTSVLVSGV
101: LRVPPGKSKE RIELGVDAVI DAGEVDDPAA YPLPKGRIKL DHLRDFLHLR PRNDTIAAVA RMRSELTFAT HSFFREMGFL CVHTPIITTD DCEGAGEMFQ
201: VTTLFSQAQK ADGDLRLKLS AGAPRQDEDD GRTVGFESDF FKRQAFLTVS GQLQAEAYAC ALSGAYTFGP TFRAENSHTS RHLAEFWMIE PEIAFANLQD
301: IMNYAESYVQ YLCKWLLEHC MEDMEFMAKT HDKSAIERLE LVSSTPFERV SYTKAVEMLT GSAGSKKFQT KVEWGIDLAS EHERYLTEVI FKKPVIVYNY
401: PRGIKAFYMR LNDDQKTVAA MDVLVPKVGE LIGGSQREER FDILKQRILD AGLPMESYEF YLDLRRYGSV KHSGFGLGLE RMLLFATGLD NIRDVIPFPR
501: YPGKADL

Best Arabidopsis Sequence Match ( AT1G70980.1 )
(BLAST)

001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L

Arabidopsis Description

SYNC3Asparagine--tRNA ligase, cytoplasmic 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.