Factsheet for TraesCS7A01G031700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G028100.1	Wheat	cytosol	93.55	94.48
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	50.2	66.41
TraesCS1A01G102600.1	Wheat	golgi	72.85	65.9
Os01t0372700-01	Rice	plastid	71.68	65.65
EER95098	Sorghum	cytosol	70.51	64.35
EER90985	Sorghum	cytosol	70.51	64.35
Zm00001d009271_P003	Maize	cytosol	70.51	64.23
TraesCS2A01G584300.1	Wheat	cytosol	66.99	61.69
VIT_11s0016g02680.t01	Wine grape	cytosol	64.06	57.44
Bra006861.1-P	Field mustard	cytosol	61.72	56.94
KRH60164	Soybean	endoplasmic reticulum	62.89	56.79
CDX88584	Canola	cytosol	58.59	56.71
AT5G56680.1	Thale cress	cytosol	62.89	56.29
KRH41453	Soybean	cytosol, extracellular, nucleus	62.11	56.08
AT1G70980.1	Thale cress	cytosol	62.3	55.87
AT1G68420.1	Thale cress	cytosol	9.38	55.17
Bra002799.1-P	Field mustard	cytosol	61.91	55.13
CDY32876	Canola	cytosol, extracellular	61.91	55.13
CDY32766	Canola	cytosol	61.91	55.13
CDY11908	Canola	plastid	61.91	55.13
TraesCS2A01G231500.2	Wheat	cytosol	45.31	54.72
PGSC0003DMT400060831	Potato	cytosol, extracellular	60.94	53.79
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	60.94	53.79
CDY42212	Canola	cytosol	58.01	52.29
CDY53991	Canola	cytosol	54.69	52.04
VIT_06s0004g07580.t01	Wine grape	cytosol	20.9	50.23
VIT_12s0034g00320.t01	Wine grape	cytosol	28.52	48.67
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	22.66	47.93
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	22.46	47.52
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	44.34	45.49
Bra002754.1-P	Field mustard	cytosol	47.27	40.54
CDY38272	Canola	cytosol	36.52	39.29
VIT_16s0013g00080.t01	Wine grape	cytosol	44.73	36.94
KRH38090	Soybean	cytosol	17.19	35.63
VIT_00s0120g00100.t01	Wine grape	cytosol	31.45	34.7
TraesCS5A01G327900.1	Wheat	cytosol	23.63	21.88
TraesCS1A01G111100.1	Wheat	cytosol	21.29	20.53
TraesCS5A01G160100.2	Wheat	cytosol	21.68	20.33

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	Gene3D:2.40.50.140	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR006195	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	PFAM:PF00152	PRINTS:PR01042
PFscan:PS50862	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457
EnsemblPlantsGene:TraesCS7A01G031700	EnsemblPlants:TraesCS7A01G031700.1	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	TIGR:cd00776	TIGR:cd04318
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7A:-:13177301..13179329

Molecular Weight (calculated)

56746.2 Da

IEP (calculated)

5.770

GRAVY (calculated)

-0.093

Length

512 amino acids

Sequence
(BLAST)

001: MAASTMAAPP ADLPAADHLE PPMAASRTPI RAILAATDAL AGERVVVGGW VRAGRVQCGG TVAFLAVNDG SCHASLQLVV EAAWVTHPPL ARLAATGTSV
101: LVSGVLRVPP GKSKERIELG VEAVIDAGEV DDPAAYPLPK GRIKLDRLRD FLHLRPRNDT IAAVARMRSE LTFATHSFFR EMGFVCVHTP IITTDDCEGA
201: GDMFQVTTLF SQAQKADRDL RLKLAPHHDA DDEEEEGTVG FESDFFRRQA FLTVSGQLQA EAYACALSGV YTFGPTFRAE NSHTSRHLAE FWMVEPEIAF
301: ADLQDIMNYA ESYVQYLCKW LLEHCMEDME FMAKTHDKAA IERLELVSST PFERVSYTKA VEILMGSAGS KKFQTKVEWG IDLASEHERY LTEVIFKKPV
401: IVYNYPRGIK AFYMRLNDDQ KTVAAMDVLV PKVGELIGGS QREERFGILK QRILEAGLPM ASYEFYLDLR RYGSVKHSGF GLGLERMLLF ATGLDNIRDV
501: IPFPRYPGKA DL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.