CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60164	Soybean	endoplasmic reticulum	73.68	32.1
KRH41453	Soybean	cytosol, extracellular, nucleus	71.66	31.22
VIT_11s0016g02680.t01	Wine grape	cytosol	55.87	24.17
AT1G70980.1	Thale cress	cytosol	53.44	23.12
CDX88584	Canola	cytosol	48.99	22.87
Os01t0372700-01	Rice	plastid	51.42	22.72
CDY53991	Canola	cytosol	48.99	22.49
CDY32766	Canola	cytosol	51.82	22.26
Bra002799.1-P	Field mustard	cytosol	51.82	22.26
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	52.23	22.24
PGSC0003DMT400060831	Potato	cytosol, extracellular	52.23	22.24
AT5G56680.1	Thale cress	cytosol	51.42	22.2
CDY42212	Canola	cytosol	51.01	22.18
TraesCS1D01G094600.1	Wheat	cytosol	50.2	21.91
Bra006861.1-P	Field mustard	cytosol	48.99	21.8
CDY32876	Canola	cytosol, extracellular	50.61	21.74
CDY11908	Canola	plastid	50.2	21.57
TraesCS1B01G113400.1	Wheat	cytosol	49.39	21.55
TraesCS1A01G102600.1	Wheat	golgi	49.39	21.55
EER95098	Sorghum	cytosol	48.58	21.39
HORVU1Hr1G021130.2	Barley	plastid	48.99	21.38
EER90985	Sorghum	cytosol	47.77	21.03
VIT_00s0120g00100.t01	Wine grape	cytosol	38.46	20.47
Zm00001d009271_P003	Maize	cytosol	46.56	20.46
TraesCS7D01G028100.1	Wheat	cytosol	36.84	17.95
Bra002754.1-P	Field mustard	cytosol	43.32	17.92
TraesCS2A01G584300.1	Wheat	cytosol	40.08	17.81
VIT_12s0034g00320.t01	Wine grape	cytosol	21.46	17.67
TraesCS7A01G031700.1	Wheat	cytosol	35.63	17.19
VIT_16s0013g00080.t01	Wine grape	cytosol	40.49	16.13
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	25.1	16.02
KRH04132	Soybean	plastid	33.6	15.09
KRH57405	Soybean	plastid	33.6	15.06
CDY38272	Canola	cytosol	28.74	14.92
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	29.15	14.43
KRH07367	Soybean	cytosol	34.41	13.62
KRH66191	Soybean	plastid	34.41	13.3
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	12.15	12.4
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	12.15	12.4
VIT_06s0004g07580.t01	Wine grape	cytosol	8.91	10.33
KRH15638	Soybean	nucleus	15.38	7.0
KRH05378	Soybean	nucleus	14.98	6.8
AT1G68420.1	Thale cress	cytosol	0.4	1.15

Protein Annotations

MapMan:17.2.3	Gene3D:3.30.930.10	UniProt:A0A0R0I6W2	EMBL:ACUP02005612	EnsemblPlantsGene:GLYMA_09G110400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlants:KRH38090	ProteinID:KRH38090	ProteinID:KRH38090.1	PFAM:PF00152	PANTHER:PTHR22594
PANTHER:PTHR22594:SF34	SUPFAM:SSF55681	UniParc:UPI0006EDA213	InterPro:aa-tRNA-synt_II	:	:

Description

hypothetical protein

Coordinates

chr9:+:21825252..21826332

Molecular Weight (calculated)

27047.6 Da

IEP (calculated)

8.622

GRAVY (calculated)

-0.102

Length

247 amino acids

Sequence
(BLAST)

001: MADASSPLMD QLAAITLDEV PKDNFSDHIP IQSIISHING GSGLASRKAR VGSWVKTGCK ANKDTFALLE INDRSCTGNL QVIVEVGLEH ASSLTATSNS
101: LRADKVLHVG SIDPAKYPLP KMRLTLEFLR DFIHLHSKTN TIFAVARIRN SLTCATHTFF NKEGFLYVHT PIVSTSDCEG VGEMFQLKAA KASKKEIGAA
201: VDQLKKANES LAKVDQLKPE ILKKDDGKDY FATPPTIVPR WIVYVVL

Best Arabidopsis Sequence Match ( AT1G70980.1 )
(BLAST)

001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L

Arabidopsis Description

SYNC3Asparagine--tRNA ligase, cytoplasmic 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.