Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g07580.t01 | Wine grape | cytosol | 54.02 | 22.07 |
| VIT_06s0004g07600.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 54.02 | 19.42 |
| VIT_06s0080g00530.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 52.87 | 19.01 |
| VIT_12s0034g00320.t01 | Wine grape | cytosol | 54.02 | 15.67 |
| GSMUA_Achr6P19310_001 | Banana | endoplasmic reticulum | 56.32 | 12.66 |
| Bra006861.1-P | Field mustard | cytosol | 65.52 | 10.27 |
| CDY32876 | Canola | cytosol, extracellular | 66.67 | 10.09 |
| Bra002799.1-P | Field mustard | cytosol | 66.67 | 10.09 |
| CDY32766 | Canola | cytosol | 66.67 | 10.09 |
| CDY53991 | Canola | cytosol | 62.07 | 10.04 |
| CDY11908 | Canola | plastid | 65.52 | 9.91 |
| CDX88584 | Canola | cytosol | 59.77 | 9.83 |
| AT5G56680.1 | Thale cress | cytosol | 64.37 | 9.79 |
| KRH41453 | Soybean | cytosol, extracellular, nucleus | 62.07 | 9.52 |
| KRH60164 | Soybean | endoplasmic reticulum | 62.07 | 9.52 |
| CDY42212 | Canola | cytosol | 62.07 | 9.51 |
| AT1G70980.1 | Thale cress | cytosol | 62.07 | 9.46 |
| TraesCS7A01G031700.1 | Wheat | cytosol | 55.17 | 9.38 |
| VIT_11s0016g02680.t01 | Wine grape | cytosol | 60.92 | 9.28 |
| TraesCS2A01G584300.1 | Wheat | cytosol | 58.62 | 9.17 |
| Os01t0372700-01 | Rice | plastid | 58.62 | 9.12 |
| TraesCS7D01G028100.1 | Wheat | cytosol | 52.87 | 9.07 |
| HORVU1Hr1G021130.2 | Barley | plastid | 58.62 | 9.01 |
| TraesCS1D01G094600.1 | Wheat | cytosol | 58.62 | 9.01 |
| TraesCS1A01G102600.1 | Wheat | golgi | 58.62 | 9.01 |
| TraesCS1B01G113400.1 | Wheat | cytosol | 58.62 | 9.01 |
| EER90985 | Sorghum | cytosol | 57.47 | 8.91 |
| EER95098 | Sorghum | cytosol | 56.32 | 8.73 |
| Zm00001d009271_P003 | Maize | cytosol | 56.32 | 8.72 |
| Solyc10g080710.1.1 | Tomato | cytosol, nucleus, unclear | 57.47 | 8.62 |
| PGSC0003DMT400060831 | Potato | cytosol, extracellular | 57.47 | 8.62 |
| VIT_16s0013g00080.t01 | Wine grape | cytosol | 56.32 | 7.9 |
| CDY52736 | Canola | endoplasmic reticulum, plastid, vacuole | 42.53 | 7.41 |
| AT4G17300.2 | Thale cress | cytosol, plastid | 47.13 | 6.98 |
| Bra002754.1-P | Field mustard | cytosol | 41.38 | 6.03 |
| AT3G07420.1 | Thale cress | cytosol | 40.23 | 5.49 |
| CDY38272 | Canola | cytosol | 29.89 | 5.46 |
| AT4G26870.1 | Thale cress | cytosol | 27.59 | 4.51 |
| AT4G31180.1 | Thale cress | cytosol | 26.44 | 4.12 |
| VIT_00s0120g00100.t01 | Wine grape | cytosol | 3.45 | 0.65 |
| KRH38090 | Soybean | cytosol | 1.15 | 0.4 |
Protein Annotations
| Gene3D:3.30.930.10 | MapMan:50.6.1 | EntrezGene:843171 | ProteinID:AAF26040.1 | ProteinID:AEE34792.1 | ArrayExpress:AT1G68420 |
| EnsemblPlantsGene:AT1G68420 | RefSeq:AT1G68420 | TAIR:AT1G68420 | RefSeq:AT1G68420-TAIR-G | EnsemblPlants:AT1G68420.1 | TAIR:AT1G68420.1 |
| Unigene:At.52435 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004812 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006418 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | RefSeq:NP_177009.1 | PFAM:PF00152 | PANTHER:PTHR22594 |
| PANTHER:PTHR22594:SF34 | UniProt:Q9M9C7 | SUPFAM:SSF55681 | UniParc:UPI0000048423 | InterPro:aa-tRNA-synt_II | : |
Description
Class II aaRS and biotin synthetases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C7]
Coordinates
chr1:+:25653893..25654156
Molecular Weight (calculated)
10106.0 Da
IEP (calculated)
4.185
GRAVY (calculated)
-0.261
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MGDVYTFAPT FRAEKSHTSR HLAEFWMVEV ELAFAGVEEA MNCSEAVVKD MCTTLLEKCR DDMEYMVEKV DEFCIDRPLM PFSENDH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.