Factsheet for HORVU1Hr1G021130.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G102600.1	Wheat	golgi	97.53	97.53
TraesCS1B01G113400.1	Wheat	cytosol	97.17	97.17
TraesCS1D01G094600.1	Wheat	cytosol	97.0	97.0
Os01t0372700-01	Rice	plastid	86.04	87.12
EER90985	Sorghum	cytosol	83.39	84.14
EER95098	Sorghum	cytosol	83.04	83.78
Zm00001d009271_P003	Maize	cytosol	82.51	83.1
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	50.71	74.16
VIT_11s0016g02680.t01	Wine grape	cytosol	73.85	73.2
CDX88584	Canola	cytosol	66.25	70.89
VIT_12s0034g00320.t01	Wine grape	cytosol	37.46	70.67
Bra006861.1-P	Field mustard	cytosol	69.08	70.45
VIT_06s0004g07580.t01	Wine grape	cytosol	26.5	70.42
KRH60164	Soybean	endoplasmic reticulum	70.49	70.37
CDY11908	Canola	plastid	71.02	69.91
PGSC0003DMT400060831	Potato	cytosol, extracellular	71.55	69.83
KRH41453	Soybean	cytosol, extracellular, nucleus	69.79	69.66
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	71.02	69.31
CDY32876	Canola	cytosol, extracellular	70.32	69.22
CDY32766	Canola	cytosol	70.32	69.22
Bra002799.1-P	Field mustard	cytosol	70.32	69.22
AT5G56680.1	Thale cress	cytosol	69.26	68.53
AT1G70980.1	Thale cress	cytosol	68.9	68.3
CDY53991	Canola	cytosol	62.72	65.99
CDY42212	Canola	cytosol	65.9	65.67
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.74	64.88
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.56	64.46
AT1G68420.1	Thale cress	cytosol	9.01	58.62
Bra002754.1-P	Field mustard	cytosol	53.53	50.75
HORVU2Hr1G049240.1	Barley	mitochondrion	47.17	49.91
KRH38090	Soybean	cytosol	21.38	48.99
VIT_00s0120g00100.t01	Wine grape	cytosol	40.11	48.92
VIT_16s0013g00080.t01	Wine grape	cytosol	52.65	48.06
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	42.23	47.9
CDY38272	Canola	cytosol	36.04	42.86
HORVU5Hr1G083090.1	Barley	cytosol, plastid	20.85	21.53
HORVU7Hr1G107410.1	Barley	cytosol	19.79	20.78
HORVU5Hr1G050160.1	Barley	cytosol	19.96	20.77
HORVU1Hr1G024420.4	Barley	mitochondrion	14.31	18.58
HORVU7Hr1G011750.7	Barley	cytosol, mitochondrion, nucleus	12.01	17.17
HORVU6Hr1G022660.15	Barley	cytosol	11.48	16.25
HORVU4Hr1G090760.1	Barley	cytosol	11.48	16.13

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	UniProt:A0A287EUU8	InterPro:Asn-tRNA-ligase
InterPro:Asp/Asn-tRNA-synth_IIb	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU1Hr1G021130
EnsemblPlants:HORVU1Hr1G021130.2	InterPro:IPR000738	InterPro:IPR006195	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA
PFAM:PF00152	PFAM:PF00458	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PFscan:PS51185
PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	InterPro:S15_NS1_RNA-bd	SMART:SM00991	SUPFAM:SSF47060	SUPFAM:SSF50249
SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI000B461DB7	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:84343764..84347935

Molecular Weight (calculated)

63258.7 Da

IEP (calculated)

5.716

GRAVY (calculated)

-0.284

Length

566 amino acids

Sequence
(BLAST)

001: MADDAASAPP TAQLAAASIS PPSSSDLDPP TSRTRIRAIL DAGDAMAGER VVVGGWVKTG RQQGKGEFAF LEVNDGSCQG NLQVMVDKDV HPLASLTHTG
101: TSVLVEGVLK KPPQEAKQRI ELKVERVIEL GEVDAAAYPL PKTKITLETL RDFVHLRART NTIGAIARIR HQLAYATHSF FDENGFLYIH TPIITTSDCE
201: GAGEMFQVTA LFSQAEKVEK ELKENPAPSE ADIEAAKIVV KEKGDAVAQL KAAKASKQEI TAAVSELQKA KENVSRVEER SKLKPGLPLK DDGKIAFEND
301: FFKRQAFLTV SGQLQVETYA CALSNVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFANLQ DDMNCAEKYV QYLCKWLLKH CREDMEFMVK HVDKAAIERL
401: ELVSSTPFER ISYTKAVEIL EGVDKKFENK VEWGIDLASE HERYLTEVIF KKPVIVYNYP KGIKAFYMRL NDDQKTVAAM DVLVPKVGEL IGGSQREERL
501: DILTQRILDA DLPLEPYEWY LDLRRFGSVK HSGFGLGFER MILFATGLEN IRDVIPFPRY PGRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.