Factsheet for TraesCS1A01G102600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G113400.1	Wheat	cytosol	99.29	99.29
TraesCS1D01G094600.1	Wheat	cytosol	99.12	99.12
HORVU1Hr1G021130.2	Barley	plastid	97.53	97.53
Os01t0372700-01	Rice	plastid	86.4	87.48
EER90985	Sorghum	cytosol	83.22	83.96
EER95098	Sorghum	cytosol	82.86	83.6
Zm00001d009271_P003	Maize	cytosol	82.33	82.92
TraesCS2A01G584300.1	Wheat	cytosol	74.03	75.36
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	50.71	74.16
VIT_11s0016g02680.t01	Wine grape	cytosol	73.5	72.85
TraesCS7A01G031700.1	Wheat	cytosol	65.9	72.85
KRH60164	Soybean	endoplasmic reticulum	71.02	70.9
CDX88584	Canola	cytosol	66.08	70.7
Bra006861.1-P	Field mustard	cytosol	68.9	70.27
KRH41453	Soybean	cytosol, extracellular, nucleus	70.14	70.02
VIT_12s0034g00320.t01	Wine grape	cytosol	37.1	70.0
PGSC0003DMT400060831	Potato	cytosol, extracellular	71.38	69.66
CDY11908	Canola	plastid	70.67	69.57
VIT_06s0004g07580.t01	Wine grape	cytosol	26.15	69.48
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	71.2	69.48
AT5G56680.1	Thale cress	cytosol	69.79	69.06
AT1G70980.1	Thale cress	cytosol	69.61	69.0
CDY32766	Canola	cytosol	69.96	68.87
CDY32876	Canola	cytosol, extracellular	69.96	68.87
Bra002799.1-P	Field mustard	cytosol	69.96	68.87
CDY53991	Canola	cytosol	62.19	65.43
CDY42212	Canola	cytosol	65.37	65.14
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.39	64.05
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.21	63.64
AT1G68420.1	Thale cress	cytosol	9.01	58.62
TraesCS2A01G231500.2	Wheat	cytosol	42.58	56.84
Bra002754.1-P	Field mustard	cytosol	53.71	50.92
KRH38090	Soybean	cytosol	21.55	49.39
VIT_00s0120g00100.t01	Wine grape	cytosol	39.58	48.28
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	42.23	47.9
VIT_16s0013g00080.t01	Wine grape	cytosol	52.3	47.74
CDY38272	Canola	cytosol	36.04	42.86
TraesCS5A01G160100.2	Wheat	cytosol	20.14	20.88
TraesCS5A01G327900.1	Wheat	cytosol	20.32	20.8
TraesCS1A01G111100.1	Wheat	cytosol	19.08	20.34

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000738	InterPro:IPR006195	HAMAP:MF_00534
InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862
PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457
EnsemblPlantsGene:TraesCS1A01G102600	EnsemblPlants:TraesCS1A01G102600.1	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	TIGR:cd00776
TIGR:cd04318	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:99014327..99017947

Molecular Weight (calculated)

63231.8 Da

IEP (calculated)

5.998

GRAVY (calculated)

-0.260

Length

566 amino acids

Sequence
(BLAST)

001: MADDAASAPP TAQLAAASIS SSPSSDLEPP TSRTRIRAIL DAGDAMAGER VVVGGWVKTG RQQGKGEFAF LEVNDGSCQG NLQVMVDKDV HPLASLTHTG
101: TSVLVEGVLK KPPAEAKQRI ELKVERVIEL GEVDAAAYPL PKTKITLETL RDFVHLRART NTIGAVARIR HQLAYATHSF FDENGFLYIH TPIITTSDCE
201: GAGEMFQVTA LFSQAEKVEK ELKENPAPSE ADVEAAKLVV KEKGDAVAQL KAAKASKQEI TAAVSVLTKA KENVLRVEER SKLKPGLPLK DDGKIAFEND
301: FFKRQAFLTV SGQLQVETYA CALSNVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFANLQ DDMNCAERYV QYLCKWLLKH CREDMEFMVK HVDKTAIERL
401: ELVSSTPFER ISYTKAVEIL EGVDKKFENK VEWGIDLASE HERYLTEVIF KKPVIVYNYP KGIKAFYMRL NDDQKTVAAM DVLVPKVGEL IGGSQREERL
501: DILKQRILDA DLPLEPYEWY LDLRRFGSVK HSGFGLGFER MILFATGLEN IRDVIPFPRY PGRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.