Factsheet for VIT_16s0013g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0034g00320.t01	Wine grape	cytosol	45.97	95.0
VIT_06s0004g07580.t01	Wine grape	cytosol	32.26	93.9
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	33.55	85.95
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	33.39	85.54
VIT_11s0016g02680.t01	Wine grape	cytosol	62.9	68.3
VIT_00s0120g00100.t01	Wine grape	cytosol	49.03	65.52
AT1G68420.1	Thale cress	cytosol	7.9	56.32
KRH60164	Soybean	endoplasmic reticulum	50.97	55.73
KRH41453	Soybean	cytosol, extracellular, nucleus	50.48	55.2
Os01t0372700-01	Rice	plastid	49.68	55.1
Bra006861.1-P	Field mustard	cytosol	49.19	54.95
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	34.19	54.78
PGSC0003DMT400060831	Potato	cytosol, extracellular	51.13	54.66
CDX88584	Canola	cytosol	46.61	54.63
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	50.97	54.48
EER90985	Sorghum	cytosol	48.23	53.3
EER95098	Sorghum	cytosol	48.23	53.3
CDY11908	Canola	plastid	49.19	53.04
Zm00001d009271_P003	Maize	cytosol	47.9	52.85
AT5G56680.1	Thale cress	cytosol	48.71	52.8
Bra002799.1-P	Field mustard	cytosol	48.87	52.7
CDY32766	Canola	cytosol	48.87	52.7
HORVU1Hr1G021130.2	Barley	plastid	48.06	52.65
TraesCS1A01G102600.1	Wheat	golgi	47.74	52.3
AT1G70980.1	Thale cress	cytosol	48.06	52.19
CDY32876	Canola	cytosol, extracellular	48.39	52.17
TraesCS1B01G113400.1	Wheat	cytosol	47.58	52.12
TraesCS1D01G094600.1	Wheat	cytosol	47.58	52.12
CDY53991	Canola	cytosol	45.16	52.04
CDY42212	Canola	cytosol	46.94	51.23
TraesCS2A01G584300.1	Wheat	cytosol	41.94	46.76
TraesCS7D01G028100.1	Wheat	cytosol	36.61	44.77
TraesCS7A01G031700.1	Wheat	cytosol	36.94	44.73
VIT_00s2558g00010.t01	Wine grape	cytosol	18.55	42.59
KRH38090	Soybean	cytosol	16.13	40.49
Bra002754.1-P	Field mustard	cytosol	37.58	39.03
CDY38272	Canola	cytosol	29.03	37.82
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	27.42	34.07
VIT_00s0229g00020.t01	Wine grape	plastid	31.29	33.22
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	5.48	23.45
VIT_04s0008g03010.t01	Wine grape	cytosol	14.68	16.73

Protein Annotations

Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:3.30.360.10	ProteinID:CCB61165	ProteinID:CCB61165.1	ncoils:Coil
UniProt:F6I2J8	EMBL:FN596738	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016620	GO:GO:0019538	GO:GO:0055114
InterPro:GlycerAld_3-P_DH_cat	InterPro:IPR000738	PFAM:PF00152	PFAM:PF02800	PFscan:PS51185	PANTHER:PTHR22594
PANTHER:PTHR22594:SF34	SMART:SM00991	SUPFAM:SSF55347	SUPFAM:SSF55681	UniParc:UPI0002109197	ArrayExpress:VIT_16s0013g00080
EnsemblPlantsGene:VIT_16s0013g00080	EnsemblPlants:VIT_16s0013g00080.t01	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:4844135..4846572

Molecular Weight (calculated)

69728.0 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.203

Length

620 amino acids

Sequence
(BLAST)

001: MEDWRCGRAI SFNIILSSIE AAKAAGKVLP SLSGGLIGMA SRVPIVDVSV VDLTFRLEKF LKIVAWCDNE WGYSSRVINL THSLTPILHY THFLFFLFLS
101: SSSKKERRNL QKEVLAALFI TSEKPEELPA RTAKPRPVRK SGVAGNLVQS HPLKSCRKAR SSLKVPPEGT KQRVEFRVEK VHHVGPVDPA KYPLPKTRLT
201: LEFLRVFVHF RSRTNMIPAV ARICNALAYA THTFFLNHGF LHAHTPIITT SDCEGAGEMF QVTTLISDAE KVKKELIKNP SPSEADIEAA KALVKEKGEA
301: VAQLKSAKAS MGEITASVAE LNKAKENLSR LEERSKLKPG IPQKDGKIDY SQDFFARQAF LTVSGQLQVE THACAIGSVY TFGPTFRAEH SHTSRHLAEF
401: WMVEPEIAFA DLKDDMNCAE AYVKFLCQWL PDNCIDDMEF MAKNFDKGSI DHLRMVASMP FERISYAEAI KLLEEAVKKD KKFENKVEWG IDLASEHERF
501: SAEVLFKKLV IVHDYPRGIK AFYMRLNDDM KTVAADKPLR QEVNIHYNSN SGNDSGNNST EESSSPTDFD LHESLEPILL NQASLVKAWH GHFWAIVPFP
601: ISPSLILKNI LLNPFLQIIF

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.