Factsheet for VIT_06s0004g07600.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	97.11	97.11
VIT_06s0004g07580.t01	Wine grape	cytosol	85.12	96.71
VIT_12s0034g00320.t01	Wine grape	cytosol	87.6	70.67
AT1G68420.1	Thale cress	cytosol	19.42	54.02
VIT_11s0016g02680.t01	Wine grape	cytosol	81.82	34.68
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	54.13	33.85
VIT_16s0013g00080.t01	Wine grape	cytosol	85.54	33.39
Bra006861.1-P	Field mustard	cytosol	66.53	29.01
Os01t0372700-01	Rice	plastid	65.7	28.44
KRH60164	Soybean	endoplasmic reticulum	65.7	28.04
KRH41453	Soybean	cytosol, extracellular, nucleus	65.7	28.04
CDY11908	Canola	plastid	66.53	28.0
Bra002799.1-P	Field mustard	cytosol	66.12	27.83
CDY32766	Canola	cytosol	66.12	27.83
HORVU1Hr1G021130.2	Barley	plastid	64.46	27.56
CDY32876	Canola	cytosol, extracellular	65.29	27.48
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	65.7	27.41
PGSC0003DMT400060831	Potato	cytosol, extracellular	65.7	27.41
CDX88584	Canola	cytosol	59.92	27.41
EER95098	Sorghum	cytosol	63.22	27.27
EER90985	Sorghum	cytosol	63.22	27.27
TraesCS1A01G102600.1	Wheat	golgi	63.64	27.21
TraesCS1D01G094600.1	Wheat	cytosol	63.64	27.21
Zm00001d009271_P003	Maize	cytosol	62.81	27.05
TraesCS1B01G113400.1	Wheat	cytosol	63.22	27.03
AT1G70980.1	Thale cress	cytosol	63.22	26.8
AT5G56680.1	Thale cress	cytosol	63.22	26.75
CDY53991	Canola	cytosol	59.09	26.58
CDY42212	Canola	cytosol	60.74	25.88
TraesCS2A01G584300.1	Wheat	cytosol	55.79	24.28
TraesCS7A01G031700.1	Wheat	cytosol	47.93	22.66
TraesCS7D01G028100.1	Wheat	cytosol	46.69	22.29
VIT_00s2558g00010.t01	Wine grape	cytosol	23.14	20.74
VIT_00s0120g00100.t01	Wine grape	cytosol	38.02	19.83
CDY38272	Canola	cytosol	35.12	17.86
VIT_00s0229g00020.t01	Wine grape	plastid	41.74	17.29
Bra002754.1-P	Field mustard	cytosol	41.32	16.75
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	30.58	14.83
KRH38090	Soybean	cytosol	12.4	12.15
VIT_04s0008g03010.t01	Wine grape	cytosol	17.36	7.72
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	2.89	4.83

Protein Annotations

Gene3D:1.10.287.10	EntrezGene:100245001	wikigene:100245001	EntrezGene:100251816	wikigene:100251816	EntrezGene:109122721
MapMan:17.2.3	Gene3D:3.30.930.10	ProteinID:CCB43424	ProteinID:CCB43424.1	ncoils:Coil	UniProt:F6GUH0
EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000738	EntrezGene:LOC100245001	wikigene:LOC100245001
EntrezGene:LOC100251816	wikigene:LOC100251816	PFAM:PF00152	PFAM:PF00458	PFscan:PS51185	PANTHER:PTHR22594
PANTHER:PTHR22594:SF44	SUPFAM:SSF55681	UniParc:UPI000210AC29	ArrayExpress:VIT_06s0004g07600	EnsemblPlantsGene:VIT_06s0004g07600	EnsemblPlants:VIT_06s0004g07600.t01
unigene:Vvi.15511	InterPro:WHEP-TRS_dom	RefSeq:XP_002277170	RefSeq:XP_002277170.1	RefSeq:XP_002277398	RefSeq:XP_002277398.1
RefSeq:XP_019075936.1	InterPro:aa-tRNA-synt_II	:	:	:	:

Description

No Description!

Coordinates

chr6:+:8386761..8387489

Molecular Weight (calculated)

27232.7 Da

IEP (calculated)

6.251

GRAVY (calculated)

-0.250

Length

242 amino acids

Sequence
(BLAST)

001: MGSRLCSREL GFGQPALCSQ CLLRAVGLLM QGEAIAQLKS AKASKGEITA SVAELNKAKE NLSRLEERSK LKPGIPQKYG KIDYSQDFFA RQAFFTVSGQ
101: LLVETYACAI GSVYTFGPTF RAEHSHTSRH LAEFWMVEPE IAFADLKDDM NCAEAYVKFL CQWLPDNCID DMEFMAKNFD KGSIDHLRMV ASMPFERISY
201: AEAIKLLEEA IKKDKKFENK VEWGIDLASE HDQILASRQG HV

Best Arabidopsis Sequence Match ( AT1G70980.1 )
(BLAST)

001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L

Arabidopsis Description

SYNC3Asparagine--tRNA ligase, cytoplasmic 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.