CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42212	Canola	cytosol	69.34	60.92
CDY53991	Canola	cytosol	64.93	60.22
Bra002754.1-P	Field mustard	cytosol	68.94	57.62
CDY32766	Canola	cytosol	61.12	53.04
CDY32876	Canola	cytosol, extracellular	60.52	52.52
CDX88584	Canola	cytosol	55.31	52.17
CDY11908	Canola	plastid	59.52	51.65
CDY38272	Canola	cytosol	48.1	50.42
AT5G56680.1	Thale cress	cytosol	55.51	48.43
AT1G70980.1	Thale cress	cytosol	55.11	48.16
KRH60164	Soybean	endoplasmic reticulum	52.91	46.56
KRH41453	Soybean	cytosol, extracellular, nucleus	52.71	46.38
VIT_11s0016g02680.t01	Wine grape	cytosol	52.91	46.23
CDY08000	Canola	cytosol	13.83	44.52
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	34.47	44.44
TraesCS7D01G028100.1	Wheat	cytosol	45.09	44.38
TraesCS7A01G031700.1	Wheat	cytosol	45.49	44.34
PGSC0003DMT400060831	Potato	cytosol, extracellular	51.1	43.97
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	50.9	43.79
EER95098	Sorghum	cytosol	48.7	43.32
EER90985	Sorghum	cytosol	48.7	43.32
Os01t0372700-01	Rice	plastid	48.3	43.11
Zm00001d009271_P003	Maize	cytosol	48.3	42.88
AT1G68420.1	Thale cress	cytosol	7.41	42.53
TraesCS1A01G102600.1	Wheat	golgi	47.9	42.23
HORVU1Hr1G021130.2	Barley	plastid	47.9	42.23
TraesCS1D01G094600.1	Wheat	cytosol	47.49	41.87
TraesCS1B01G113400.1	Wheat	cytosol	47.49	41.87
TraesCS2A01G584300.1	Wheat	cytosol	45.09	40.47
CDY50134	Canola	plastid	39.68	35.23
CDY58174	Canola	plastid	39.68	35.23
CDY42978	Canola	plastid	38.48	34.1
CDY35583	Canola	plastid	38.08	33.93
VIT_06s0004g07580.t01	Wine grape	cytosol	14.43	33.8
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	14.83	30.58
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	14.63	30.17
KRH38090	Soybean	cytosol	14.43	29.15
VIT_12s0034g00320.t01	Wine grape	cytosol	17.43	29.0
VIT_16s0013g00080.t01	Wine grape	cytosol	34.07	27.42
VIT_00s0120g00100.t01	Wine grape	cytosol	25.45	27.37
CDY07998	Canola	cytosol	32.87	26.62
CDY35930	Canola	cytosol	33.47	26.34
CDX74047	Canola	cytosol	32.67	26.16
CDY28051	Canola	cytosol	33.07	26.07
CDX73541	Canola	cytosol	9.02	21.53
CDX78190	Canola	cytosol	6.41	18.18
CDY35247	Canola	cytosol	19.04	17.96
CDY13418	Canola	cytosol	19.44	17.57
CDY28248	Canola	cytosol	19.04	17.3
CDX68726	Canola	extracellular	19.04	17.3
CDX72297	Canola	cytosol	19.04	17.15
CDY14727	Canola	cytosol	18.24	16.95
CDY06845	Canola	nucleus	14.03	13.81

Protein Annotations

MapMan:17.2.3	Gene3D:2.40.50.140	Gene3D:3.30.930.10	GO:A0A078IS99	UniProt:A0A078IS99	EnsemblPlants:CDY52736
ProteinID:CDY52736	ProteinID:CDY52736.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004812	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00007678001
InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36
SUPFAM:SSF50249	SUPFAM:SSF55681	UniParc:UPI0004EDDD03	InterPro:aa-tRNA-synt_II	:	:

Description

BnaC09g53360DBnaC09g53360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IS99]

Coordinates

chrLK033123:-:47463..50266

Molecular Weight (calculated)

55380.3 Da

IEP (calculated)

7.678

GRAVY (calculated)

0.023

Length

499 amino acids

Sequence
(BLAST)

001: MWDLVCYLAF NVGLGLTSLI LPLKPRTTHF VSFPLANHLG ALSHLRHSTP LVARSSSSSA NLQVMFDASV PATIDNGCLK IPLQGKEGAF SSPTVEKQRF
101: TRHVPVKSIL CRPDGGAGLA GQKVLIFGWV RTARLQGKGS FAFLEVNDGS CPAYLQVIVD ASLSDDLSKL IAKGTCVVVD GCLKLPPQGT KQKIELKVEE
201: VVSVGTVDQV TYPFPKNKPS PEHLRKYLHL RARTSLIASV ARIRNALAFC DTLFLSVTKF PLRQGSNLAY AYSLRATLVL LAFWIVEPEL ALADLKEDMD
301: CAEAYVRYMC TWLLDNCYDD LEVMAKNVDD GCIDRLKLVA STPFVRVTYT DAIELLKEAV AQGETFENQV EWGIDLASEH ERYLTEVVFQ KPVIVYNYPK
401: GIKAFYMRVN DDGKTVAAMD VLVPKNSLVG AKEKNGMNRL EEIGLPVEPY EWYLDLRRHG TVKHSGFGLG LERMVLFATG MDNIRDVIPF PRYPGRADL

Best Arabidopsis Sequence Match ( AT1G70980.1 )
(BLAST)

001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L

Arabidopsis Description

SYNC3Asparagine--tRNA ligase, cytoplasmic 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.