Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G56680.1 | Thale cress | cytosol | 84.24 | 84.09 |
| CDX88584 | Canola | cytosol | 76.71 | 82.8 |
| Bra006861.1-P | Field mustard | cytosol | 79.16 | 81.44 |
| CDY11908 | Canola | plastid | 80.74 | 80.17 |
| CDY32766 | Canola | cytosol | 79.86 | 79.3 |
| Bra002799.1-P | Field mustard | cytosol | 79.86 | 79.3 |
| CDY32876 | Canola | cytosol, extracellular | 79.68 | 79.13 |
| VIT_11s0016g02680.t01 | Wine grape | cytosol | 75.48 | 75.48 |
| CDY42212 | Canola | cytosol | 74.08 | 74.47 |
| CDY53991 | Canola | cytosol | 69.88 | 74.16 |
| KRH60164 | Soybean | endoplasmic reticulum | 72.85 | 73.37 |
| KRH41453 | Soybean | cytosol, extracellular, nucleus | 71.98 | 72.49 |
| VIT_06s0004g07580.t01 | Wine grape | cytosol | 26.27 | 70.42 |
| PGSC0003DMT400060831 | Potato | cytosol, extracellular | 70.75 | 69.66 |
| TraesCS1A01G102600.1 | Wheat | golgi | 69.0 | 69.61 |
| GSMUA_Achr6P19310_001 | Banana | endoplasmic reticulum | 47.11 | 69.51 |
| Os01t0372700-01 | Rice | plastid | 67.95 | 69.41 |
| Solyc10g080710.1.1 | Tomato | cytosol, nucleus, unclear | 70.4 | 69.31 |
| TraesCS1B01G113400.1 | Wheat | cytosol | 68.65 | 69.26 |
| TraesCS1D01G094600.1 | Wheat | cytosol | 68.65 | 69.26 |
| VIT_12s0034g00320.t01 | Wine grape | cytosol | 36.25 | 69.0 |
| HORVU1Hr1G021130.2 | Barley | plastid | 68.3 | 68.9 |
| EER90985 | Sorghum | cytosol | 65.85 | 67.02 |
| EER95098 | Sorghum | cytosol | 65.85 | 67.02 |
| Zm00001d009271_P003 | Maize | cytosol | 65.32 | 66.37 |
| VIT_06s0080g00530.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 26.97 | 63.64 |
| VIT_06s0004g07600.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 26.8 | 63.22 |
| TraesCS7D01G028100.1 | Wheat | cytosol | 55.69 | 62.72 |
| TraesCS7A01G031700.1 | Wheat | cytosol | 55.87 | 62.3 |
| AT1G68420.1 | Thale cress | cytosol | 9.46 | 62.07 |
| TraesCS2A01G584300.1 | Wheat | cytosol | 59.37 | 60.97 |
| Bra002754.1-P | Field mustard | cytosol | 61.82 | 59.13 |
| CDY52736 | Canola | endoplasmic reticulum, plastid, vacuole | 48.16 | 55.11 |
| KRH38090 | Soybean | cytosol | 23.12 | 53.44 |
| CDY38272 | Canola | cytosol | 41.68 | 50.0 |
| VIT_16s0013g00080.t01 | Wine grape | cytosol | 52.19 | 48.06 |
| VIT_00s0120g00100.t01 | Wine grape | cytosol | 39.05 | 48.06 |
| AT4G17300.2 | Thale cress | cytosol, plastid | 47.46 | 46.17 |
| AT3G07420.1 | Thale cress | cytosol | 41.68 | 37.3 |
| AT4G31180.1 | Thale cress | cytosol | 21.02 | 21.51 |
| AT4G26870.1 | Thale cress | cytosol | 19.96 | 21.43 |
Protein Annotations
| KEGG:00970+6.1.1.22 | Gene3D:1.10.287.10 | MapMan:17.2.3 | Gene3D:2.40.50.140 | EntrezGene:843436 | UniProt:A0A178WMG1 |
| ProteinID:AAD55509.1 | ProteinID:AEE35146.1 | ArrayExpress:AT1G70980 | EnsemblPlantsGene:AT1G70980 | RefSeq:AT1G70980 | TAIR:AT1G70980 |
| RefSeq:AT1G70980-TAIR-G | EnsemblPlants:AT1G70980.1 | TAIR:AT1G70980.1 | InterPro:Asn-tRNA-ligase | InterPro:Asp/Asn-tRNA-synth_IIb | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004812 | GO:GO:0004816 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006418 | GO:GO:0006421 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016874 | GO:GO:0019538 | InterPro:IPR000738 |
| InterPro:IPR006195 | HAMAP:MF_00534 | InterPro:NA-bd_OB-fold | InterPro:NA-bd_OB_tRNA | RefSeq:NP_177254.1 | ProteinID:OAP19111.1 |
| PFAM:PF00152 | PFAM:PF01336 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR01042 | PFscan:PS50862 | PFscan:PS51185 | PANTHER:PTHR22594 | PANTHER:PTHR22594:SF44 |
| UniProt:Q9SSK1 | SMART:SM00991 | SUPFAM:SSF50249 | SUPFAM:SSF55681 | Symbol:SYNC3 | TIGRFAMs:TIGR00457 |
| UniParc:UPI00001365D2 | InterPro:WHEP-TRS_dom | InterPro:aa-tRNA-synt_II | InterPro:aa-tRNA-synth_II | SEG:seg | : |
Description
SYNC3Asparagine--tRNA ligase, cytoplasmic 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK1]
Coordinates
chr1:+:26762041..26764623
Molecular Weight (calculated)
63703.3 Da
IEP (calculated)
5.341
GRAVY (calculated)
-0.245
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.