CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 22945350

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60164	Soybean	endoplasmic reticulum	96.65	96.65
VIT_11s0016g02680.t01	Wine grape	cytosol	77.95	77.41
Bra006861.1-P	Field mustard	cytosol	72.31	73.87
CDX88584	Canola	cytosol	68.61	73.53
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	50.09	73.39
AT5G56680.1	Thale cress	cytosol	73.9	73.25
VIT_06s0004g07580.t01	Wine grape	cytosol	27.34	72.77
Bra002799.1-P	Field mustard	cytosol	73.37	72.35
CDY32766	Canola	cytosol	73.37	72.35
VIT_12s0034g00320.t01	Wine grape	cytosol	38.1	72.0
CDY11908	Canola	plastid	73.02	72.0
CDY32876	Canola	cytosol, extracellular	73.02	72.0
AT1G70980.1	Thale cress	cytosol	72.49	71.98
Os01t0372700-01	Rice	plastid	70.9	71.91
KRH38090	Soybean	cytosol	31.22	71.66
PGSC0003DMT400060831	Potato	cytosol, extracellular	72.13	70.52
TraesCS1B01G113400.1	Wheat	cytosol	70.19	70.32
TraesCS1D01G094600.1	Wheat	cytosol	70.02	70.14
TraesCS1A01G102600.1	Wheat	golgi	70.02	70.14
EER95098	Sorghum	cytosol	69.31	70.05
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	71.6	70.0
CDY53991	Canola	cytosol	66.31	69.89
HORVU1Hr1G021130.2	Barley	plastid	69.66	69.79
CDY42212	Canola	cytosol	69.49	69.37
EER90985	Sorghum	cytosol	68.61	69.34
Zm00001d009271_P003	Maize	cytosol	68.61	69.22
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	28.4	66.53
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	28.04	65.7
TraesCS7D01G028100.1	Wheat	cytosol	56.61	63.31
TraesCS7A01G031700.1	Wheat	cytosol	56.08	62.11
AT1G68420.1	Thale cress	cytosol	9.52	62.07
TraesCS2A01G584300.1	Wheat	cytosol	59.08	60.25
Bra002754.1-P	Field mustard	cytosol	57.32	54.44
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	46.38	52.71
VIT_16s0013g00080.t01	Wine grape	cytosol	55.2	50.48
KRH04132	Soybean	plastid	48.32	49.82
KRH57405	Soybean	plastid	48.15	49.55
VIT_00s0120g00100.t01	Wine grape	cytosol	40.04	48.92
CDY38272	Canola	cytosol	40.04	47.69
KRH07367	Soybean	cytosol	44.44	40.38
KRH66191	Soybean	plastid	44.62	39.59
KRH15638	Soybean	nucleus	21.16	22.1
KRH05378	Soybean	nucleus	21.16	22.06

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	EntrezGene:100804064	MapMan:17.2.3	Gene3D:2.40.50.140	EMBL:ACUP02004766
InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G031100	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	UniProt:I1KPU2	InterPro:IPR000738	InterPro:IPR006195	EnsemblPlants:KRH41453	ProteinID:KRH41453
ProteinID:KRH41453.1	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF00458
PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36
InterPro:S15_NS1_RNA-bd	SMART:SM00991	SUPFAM:SSF47060	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457
UniParc:UPI0002337DAB	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	:	:

Description

hypothetical protein

Coordinates

chr8:-:2458617..2461505

Molecular Weight (calculated)

63426.2 Da

IEP (calculated)

6.280

GRAVY (calculated)

-0.256

Length

567 amino acids

Sequence
(BLAST)

001: MADSSSPPTN QLAATTLDEV PKANFSDRVP IRSIISRPDG GSGLAGSKAR VGGWVKTGRK ADKDAFAFLE INDGSCAGNL QVIVEAALGE LGQLVPTGTC
101: VVFDGHLKLP PSGTKQKIEL RADKVLHVGP VDPAKYPLPK MRLTLEFLRD FVHLRSRTNT ISAVARIRNA LAYATHTFFN KEGFLYVHTP IVTTSDCEGA
201: GEMFQVTTLL SEAERLEKEF LQNPPPSEAD VEVARFVVQE KGEVVSQLKA AKASKQEIGA AVDQLKKAKE SFAKVEERSK LKPGIPRKDD GKVDYGKDFF
301: ARQAFLTVSG QLQVESYVCA LSSVYTFGPT FRAENSHTSR HLAEFWMVEP EIAFAELKDD MNCAEAYVKF MCQWLLDNCL EDMEFMADKF DKGCIDRLKL
401: VASTPFIRVT YTEAVELLED AVKNGKKFEN EVKWGIDLAS EHERYLTEVK FQKPVIVYNY PKDIKAFYMR LNDDLKTVAA MDVLVPKVGE LIGGSQREER
501: CDVIQTRIKE MGLPIEPYEW YLDLRRYGTV KHAGFGLGFE RMILFVTGLE NIRDVIPFPR YPGRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.