CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66191	Soybean	plastid	90.38	88.26
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	15.54	66.9
VIT_00s2558g00010.t01	Wine grape	cytosol	28.21	65.19
PGSC0003DMT400056710	Potato	cytosol	53.37	54.86
CDY08000	Canola	cytosol	13.62	54.84
Solyc09g057950.2.1	Tomato	cytosol	52.72	54.02
CDY07998	Canola	cytosol	50.64	51.3
CDY28051	Canola	cytosol	51.28	50.55
Bra001250.1-P	Field mustard	cytosol	50.32	50.4
Bra029647.1-P	Field mustard	cytosol	50.96	50.16
CDX74047	Canola	cytosol	50.0	50.08
CDY35930	Canola	cytosol	50.8	50.0
AT3G07420.1	Thale cress	cytosol	50.96	49.84
GSMUA_AchrUn_...	Banana	cytosol	40.87	45.21
KRH60164	Soybean	endoplasmic reticulum	40.87	44.97
GSMUA_Achr8P31970_001	Banana	mitochondrion	36.54	44.88
KRH41453	Soybean	cytosol, extracellular, nucleus	40.38	44.44
Os12t0414500-01	Rice	plasma membrane	39.42	40.0
KRH04132	Soybean	plastid	31.73	36.0
KRH57405	Soybean	plastid	31.41	35.57
KRH38090	Soybean	cytosol	13.62	34.41
KRH15638	Soybean	nucleus	14.58	16.76
KRH05378	Soybean	nucleus	14.58	16.73

Protein Annotations

KEGG:00970+6.1.1.22	EntrezGene:100800893	MapMan:17.2.3	EMBL:ACUP02009974	InterPro:Asn-tRNA-ligase	ncoils:Coil
EnsemblPlantsGene:GLYMA_16G083800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:I1MM63	EnsemblPlants:KRH07367	ProteinID:KRH07367
ProteinID:KRH07367.1	PFAM:PF00152	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF55681	TIGRFAMs:TIGR00457
UniParc:UPI00023D7D75	InterPro:aa-tRNA-synt_II	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:9677835..9682962

Molecular Weight (calculated)

69685.2 Da

IEP (calculated)

7.539

GRAVY (calculated)

-0.324

Length

624 amino acids

Sequence
(BLAST)

001: MAAAATTTTA QDTSSVPPLA YSGRVQLKEL LDRSEAAVGQ RVVVGGWVKS AKEVEKTAPP PSIATTDDTA REGGKGKDVS CVEILQSRIP LIRSILDVFG
101: GGGYGQRKKR ENVTAPNDKV LPPKASTAYL LLTDGSCAPS LQVVVDSSVA TPSRLVPTGT CLLVEGQLER AEGKHAIELI AEKVLHIGTV DFDKYPLSKK
201: RIPLDKLRDY SQFRPRTTTV ATVMRIRSSL SFATHTFFNE HAFIDVQVPI ITSTDSEGFS NMFRVNTLEQ KAEKEKLETV YETEGVSLEH VKAAAKEKSN
301: IVEHLERTES NREALAAAVQ DLRKTNELAS QLEAREKRKL GASFKDDKVD SSKEFFPFQT YLTVSGRLHL ESYACALGNV YSFGPRFLAD KTNSAKHAAE
401: MWMIEVEMAF SQLKDSMICA NDFFKYLCNW VLVHCSEEMT FVAKRIDNTC MNRLRQIISG SPEMMTYHKA IDVLRKSSSQ AEDKKFETNF ESGFVLTSEH
501: LSYLTDMIYQ KPVMIYNYPK EAKPFYARQN DDGTVAAFDL VVPKLGTIIS GSQNEERLNM ISSRIDELGL PREKYEWYLD LRRNGTVNNS GFTLRFDLMV
601: LFATGLGNVR DVIPFPRSYG KAYT

Best Arabidopsis Sequence Match ( AT3G07420.1 )
(BLAST)

001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN

Arabidopsis Description

SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.