Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07420.1 | CDX89844 | AT1G04100.1 | 21798944 |
| AT3G07420.1 | CDY18205 | AT1G04100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0141g00940.t01 | Wine grape | cytosol, extracellular, plastid | 49.03 | 52.41 |
| CDY07998 | Canola | cytosol | 87.1 | 21.92 |
| CDX74047 | Canola | cytosol | 87.74 | 21.83 |
| CDY28051 | Canola | cytosol | 83.87 | 20.54 |
| CDY35930 | Canola | cytosol | 83.87 | 20.5 |
| AT3G07420.1 | Thale cress | cytosol | 78.71 | 19.12 |
| Solyc09g057950.2.1 | Tomato | cytosol | 57.42 | 14.61 |
| CDX88584 | Canola | cytosol | 49.68 | 14.56 |
| PGSC0003DMT400056710 | Potato | cytosol | 56.77 | 14.5 |
| GSMUA_AchrUn_... | Banana | cytosol | 50.97 | 14.01 |
| CDY52736 | Canola | endoplasmic reticulum, plastid, vacuole | 44.52 | 13.83 |
| KRH66191 | Soybean | plastid | 56.77 | 13.77 |
| Os12t0414500-01 | Rice | plasma membrane | 54.19 | 13.66 |
| KRH07367 | Soybean | cytosol | 54.84 | 13.62 |
| CDY35583 | Canola | plastid | 49.03 | 13.57 |
| CDY53991 | Canola | cytosol | 47.1 | 13.57 |
| CDY50134 | Canola | plastid | 49.03 | 13.52 |
| CDY42978 | Canola | plastid | 49.03 | 13.5 |
| CDY32876 | Canola | cytosol, extracellular | 49.68 | 13.39 |
| CDY32766 | Canola | cytosol | 49.68 | 13.39 |
| CDY11908 | Canola | plastid | 49.68 | 13.39 |
| GSMUA_Achr8P31970_001 | Banana | mitochondrion | 43.87 | 13.39 |
| CDY58174 | Canola | plastid | 48.39 | 13.35 |
| CDY42212 | Canola | cytosol | 47.1 | 12.85 |
| CDX73541 | Canola | cytosol | 13.55 | 10.05 |
| CDX78190 | Canola | cytosol | 10.32 | 9.09 |
| CDY38272 | Canola | cytosol | 23.87 | 7.77 |
| CDY13418 | Canola | cytosol | 25.81 | 7.25 |
| CDX72297 | Canola | cytosol | 25.81 | 7.22 |
| CDX68726 | Canola | extracellular | 25.16 | 7.1 |
| CDY28248 | Canola | cytosol | 25.16 | 7.1 |
| CDY14727 | Canola | cytosol | 23.87 | 6.89 |
| CDY35247 | Canola | cytosol | 23.23 | 6.81 |
| CDY06845 | Canola | nucleus | 6.45 | 1.97 |
| VIT_00s2558g00010.t01 | Wine grape | cytosol | 2.58 | 1.48 |
Protein Annotations
| MapMan:17.2.3 | Gene3D:3.30.930.10 | GO:A0A078F0N0 | UniProt:A0A078F0N0 | EnsemblPlants:CDY08000 | ProteinID:CDY08000 |
| ProteinID:CDY08000.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004812 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006418 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00125235001 | PFAM:PF00152 | PANTHER:PTHR22594 |
| PANTHER:PTHR22594:SF36 | SUPFAM:SSF55681 | UniParc:UPI0004EF07EF | InterPro:aa-tRNA-synt_II | : | : |
Description
BnaC03g35230DBnaC03g35230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F0N0]
Coordinates
chrLK031982:+:501566..502189
Molecular Weight (calculated)
17818.6 Da
IEP (calculated)
9.308
GRAVY (calculated)
-0.333
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MISFLYKQAT TRTFEAKPKW GVALTEEHLG YLTDEICKGS VMIIHSYPKE VKPFYVRLNE DKKTVAAFDL VVPKVGVVIS GSQNEDRFEI LDGRVKEFGL
101: TTKEKYEWYL DLRRHGTVRH SGISLKMEHM LLFATGLPDI KDAIPFHRSW GKANN
101: TTKEKYEWYL DLRRHGTVRH SGISLKMEHM LLFATGLPDI KDAIPFHRSW GKANN
001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN
Arabidopsis Description
SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.