Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07420.1 | CDX89844 | AT1G04100.1 | 21798944 |
| AT3G07420.1 | CDY18205 | AT1G04100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029647.1-P | Field mustard | cytosol | 96.37 | 96.37 |
| CDY28051 | Canola | cytosol | 94.95 | 95.1 |
| CDY08000 | Canola | cytosol | 20.5 | 83.87 |
| CDY07998 | Canola | cytosol | 81.07 | 83.44 |
| CDX74047 | Canola | cytosol | 80.6 | 82.02 |
| AT3G07420.1 | Thale cress | cytosol | 81.23 | 80.72 |
| VIT_07s0141g00940.t01 | Wine grape | cytosol, extracellular, plastid | 14.04 | 61.38 |
| VIT_00s2558g00010.t01 | Wine grape | cytosol | 24.76 | 58.15 |
| PGSC0003DMT400056710 | Potato | cytosol | 50.47 | 52.72 |
| Solyc09g057950.2.1 | Tomato | cytosol | 49.37 | 51.4 |
| KRH07367 | Soybean | cytosol | 50.0 | 50.8 |
| KRH66191 | Soybean | plastid | 50.79 | 50.39 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.06 | 45.04 |
| GSMUA_Achr8P31970_001 | Banana | mitochondrion | 34.07 | 42.52 |
| CDX88584 | Canola | cytosol | 35.17 | 42.16 |
| CDY32766 | Canola | cytosol | 38.01 | 41.91 |
| CDY32876 | Canola | cytosol, extracellular | 37.85 | 41.74 |
| Os12t0414500-01 | Rice | plasma membrane | 39.75 | 40.98 |
| CDY11908 | Canola | plastid | 36.91 | 40.7 |
| CDY42212 | Canola | cytosol | 36.12 | 40.32 |
| CDY53991 | Canola | cytosol | 33.91 | 39.96 |
| CDY50134 | Canola | plastid | 32.02 | 36.12 |
| CDY58174 | Canola | plastid | 32.02 | 36.12 |
| CDY42978 | Canola | plastid | 31.86 | 35.88 |
| CDY35583 | Canola | plastid | 31.55 | 35.71 |
| CDY52736 | Canola | endoplasmic reticulum, plastid, vacuole | 26.34 | 33.47 |
| CDY38272 | Canola | cytosol | 24.92 | 33.19 |
| CDX78190 | Canola | cytosol | 6.15 | 22.16 |
| CDX73541 | Canola | cytosol | 7.1 | 21.53 |
| CDY35247 | Canola | cytosol | 16.25 | 19.47 |
| CDX68726 | Canola | extracellular | 16.72 | 19.31 |
| CDY28248 | Canola | cytosol | 16.56 | 19.13 |
| CDY13418 | Canola | cytosol | 16.56 | 19.02 |
| CDY14727 | Canola | cytosol | 16.09 | 18.99 |
| CDX72297 | Canola | cytosol | 16.56 | 18.95 |
| CDY06845 | Canola | nucleus | 11.51 | 14.4 |
Protein Annotations
| KEGG:00970+6.1.1.22 | MapMan:17.2.3 | GO:A0A078HC09 | UniProt:A0A078HC09 | InterPro:Asn-tRNA-ligase | EnsemblPlants:CDY35930 |
| ProteinID:CDY35930 | ProteinID:CDY35930.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004812 |
| GO:GO:0004816 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006418 | GO:GO:0006421 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00059484001 | PFAM:PF00152 |
| PANTHER:PTHR22594 | PANTHER:PTHR22594:SF36 | SUPFAM:SSF55681 | TIGRFAMs:TIGR00457 | UniParc:UPI0004EEF645 | InterPro:aa-tRNA-synt_II |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g30200DBnaA05g30200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC09]
Coordinates
chrLK032364:-:49910..52418
Molecular Weight (calculated)
70645.5 Da
IEP (calculated)
7.747
GRAVY (calculated)
-0.318
Length
634 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSHGKSHHE DASPNLIPLS KYSNRVELKT LLEQSDGGAG FLGKRVVVGG WVKSSRAVKK ESLPPPPPEV FAPPPSSGGS QASPTPSVSC TEIINSRMNI
101: FRKLFDVLSG GGKTYPIFEK QDVAGQKATS PPEYIINFQI NDGSSVSTLQ VIVDSVLSSV PATQLMALGT CIVAEGVLRQ PLSASAKHVI ELEAEKLLHV
201: GTVDPDKYPL SKKQLPLHML RDHSHFRPRT TTVGSVTRVH SALTLASHTF LQNNGFQYVQ VPVITTTGGG EMFRVTALIG EDDDKEEKKH VNERDGFSID
301: TVKAAVKEKT RLIDHLKRSD SNREAVVAAV HDLKKTSDLA SQLEMKQRPK ASAILIKPEK IDLSKDFFGC EAYLTVSGRL HLESYASALG KVYTFGPRFI
401: ADKIDSTRHL AEMWNVETEI AFSDLDDAMD CAAEFFKFLC KYLLENRHED MKFISKRVDK TITIRLEATA SSSILRFSYT EAISVLQKAT TRTFETKPEW
501: GVALTEEHLS YLTDEIYKGC VIIHSYPKEV KPFYTRLNDD NKTVAAFDLV VPKVGVVITG SQNEERFEIL DARIREYGLT TREKYEWYLD LRRHGTVKHS
601: GISLRMEHML LFATGLPDIK DSVPFPRSWG KANN
101: FRKLFDVLSG GGKTYPIFEK QDVAGQKATS PPEYIINFQI NDGSSVSTLQ VIVDSVLSSV PATQLMALGT CIVAEGVLRQ PLSASAKHVI ELEAEKLLHV
201: GTVDPDKYPL SKKQLPLHML RDHSHFRPRT TTVGSVTRVH SALTLASHTF LQNNGFQYVQ VPVITTTGGG EMFRVTALIG EDDDKEEKKH VNERDGFSID
301: TVKAAVKEKT RLIDHLKRSD SNREAVVAAV HDLKKTSDLA SQLEMKQRPK ASAILIKPEK IDLSKDFFGC EAYLTVSGRL HLESYASALG KVYTFGPRFI
401: ADKIDSTRHL AEMWNVETEI AFSDLDDAMD CAAEFFKFLC KYLLENRHED MKFISKRVDK TITIRLEATA SSSILRFSYT EAISVLQKAT TRTFETKPEW
501: GVALTEEHLS YLTDEIYKGC VIIHSYPKEV KPFYTRLNDD NKTVAAFDLV VPKVGVVITG SQNEERFEIL DARIREYGLT TREKYEWYLD LRRHGTVKHS
601: GISLRMEHML LFATGLPDIK DSVPFPRSWG KANN
001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN
Arabidopsis Description
SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.