CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53991	Canola	cytosol	94.72	100.0
CDY32766	Canola	cytosol	88.38	87.3
CDY32876	Canola	cytosol, extracellular	87.32	86.26
CDX88584	Canola	cytosol	78.52	84.31
CDY11908	Canola	plastid	84.15	83.13
AT1G70980.1	Thale cress	cytosol	74.47	74.08
AT5G56680.1	Thale cress	cytosol	74.47	73.95
VIT_11s0016g02680.t01	Wine grape	cytosol	71.48	71.1
KRH60164	Soybean	endoplasmic reticulum	70.25	70.37
KRH41453	Soybean	cytosol, extracellular, nucleus	69.37	69.49
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	60.92	69.34
Os01t0372700-01	Rice	plastid	66.37	67.44
VIT_06s0004g07580.t01	Wine grape	cytosol	25.0	66.67
VIT_12s0034g00320.t01	Wine grape	cytosol	35.21	66.67
HORVU1Hr1G021130.2	Barley	plastid	65.67	65.9
TraesCS1A01G102600.1	Wheat	golgi	65.14	65.37
TraesCS1B01G113400.1	Wheat	cytosol	64.79	65.02
PGSC0003DMT400060831	Potato	cytosol, extracellular	66.37	65.0
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	44.19	64.86
TraesCS1D01G094600.1	Wheat	cytosol	64.61	64.84
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	66.2	64.83
EER90985	Sorghum	cytosol	63.73	64.53
EER95098	Sorghum	cytosol	63.56	64.35
Zm00001d009271_P003	Maize	cytosol	62.85	63.52
AT1G68420.1	Thale cress	cytosol	9.51	62.07
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	26.23	61.57
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	25.88	60.74
TraesCS2A01G584300.1	Wheat	cytosol	57.39	58.63
TraesCS7A01G031700.1	Wheat	cytosol	52.29	58.01
TraesCS7D01G028100.1	Wheat	cytosol	51.76	57.99
CDY38272	Canola	cytosol	48.24	57.56
KRH38090	Soybean	cytosol	22.18	51.01
CDY08000	Canola	cytosol	12.85	47.1
VIT_16s0013g00080.t01	Wine grape	cytosol	51.23	46.94
CDY50134	Canola	plastid	45.6	46.09
CDY58174	Canola	plastid	45.6	46.09
VIT_00s0120g00100.t01	Wine grape	cytosol	37.5	45.91
CDY42978	Canola	plastid	45.25	45.65
CDY35583	Canola	plastid	44.01	44.64
CDY28051	Canola	cytosol	40.32	36.18
CDY35930	Canola	cytosol	40.32	36.12
CDY07998	Canola	cytosol	38.91	35.88
CDX74047	Canola	cytosol	38.91	35.47
CDX73541	Canola	cytosol	10.04	27.27
CDY35247	Canola	cytosol	21.13	22.68
CDY28248	Canola	cytosol	21.48	22.22
CDX68726	Canola	extracellular	21.48	22.22
CDY14727	Canola	cytosol	20.42	21.6
CDY13418	Canola	cytosol	20.95	21.56
CDX72297	Canola	cytosol	20.95	21.48
CDY06845	Canola	nucleus	17.25	19.33
CDX78190	Canola	cytosol	5.99	19.32

Protein Annotations

MapMan:17.2.3	Gene3D:2.40.50.140	GO:A0A078HWL6	UniProt:A0A078HWL6	EnsemblPlants:CDY42212	ProteinID:CDY42212
ProteinID:CDY42212.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004812	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00074424001
InterPro:IPR000738	InterPro:IPR006195	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336
PFscan:PS50862	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF50249	SUPFAM:SSF55681
UniParc:UPI0004EEC798	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

BnaA01g25830DBnaA01g25830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWL6]

Coordinates

chrLK032518:+:118699..120985

Molecular Weight (calculated)

62505.6 Da

IEP (calculated)

4.832

GRAVY (calculated)

-0.179

Length

568 amino acids

Sequence
(BLAST)

001: MGGDIPPPVD QLAAVSLTSD EASSSTVQKA RFSDRVRIQS ILGRPDGGAG LAGQKVRISG WVKTGREQGK GAFAFLEVND GSCPANLQVM VDASVSDLSK
101: LIATGTCVTV DGCLKLPPEG KGTKQKIELS VVEVVDVGTV DPGTYPIPKT KLTLERLREF LHLRARTNSI SAIARIRHAL AIATHTFFDE EGFLYVQTPI
201: ITTSDCEGAG EMFQVTTLIS TTEKLERELI ENPPPTEADV EAARVVVKER GEAVAELKSA KASEQDITAS LAELANAKLS LSRTVERSRL KPGLRTKDGE
301: VDYSPDFFGR QAFLSVSGLQ LESYACALGS VYTFGPTFRA ENSHTSRHLA EFWIVEPELA LADLKEDMDC AEAYVRYMCT WLLDNCYDDL EVMAKNVDDG
401: CIDRLKLVAS TPFVRVTYTD AIELLKEAVA QGETFENQVE WGIDLASEHE RYLTEVVFQK PVIVYNYPKG IKAFYMRVND DGKTVAAMDV LVPKNSLVGA
501: KEKNGMNRLE EIGLPVEPYE WYLDLRRHGT VKHSGFGLGL ERMVLFATGM DNIRDVIPFP RYPGRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.