Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 2
- extracellular 3
- endoplasmic reticulum 5
- vacuole 3
- plasma membrane 3
- golgi 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_06s0004g07580.t01 | Wine grape | cytosol | 32.04 | 58.22 |
AT1G68420.1 | Thale cress | cytosol | 12.66 | 56.32 |
VIT_12s0034g00320.t01 | Wine grape | cytosol | 42.89 | 55.33 |
VIT_06s0004g07600.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 33.85 | 54.13 |
VIT_06s0080g00530.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 33.85 | 54.13 |
EER95098 | Sorghum | cytosol | 76.23 | 52.58 |
EER90985 | Sorghum | cytosol | 75.97 | 52.41 |
Zm00001d009271_P003 | Maize | cytosol | 75.71 | 52.14 |
Os01t0372700-01 | Rice | plastid | 74.68 | 51.7 |
TraesCS1A01G102600.1 | Wheat | golgi | 74.16 | 50.71 |
HORVU1Hr1G021130.2 | Barley | plastid | 74.16 | 50.71 |
TraesCS7D01G028100.1 | Wheat | cytosol | 66.41 | 50.69 |
TraesCS1D01G094600.1 | Wheat | cytosol | 73.9 | 50.53 |
TraesCS1B01G113400.1 | Wheat | cytosol | 73.9 | 50.53 |
KRH60164 | Soybean | endoplasmic reticulum | 73.64 | 50.26 |
VIT_11s0016g02680.t01 | Wine grape | cytosol | 74.16 | 50.26 |
TraesCS7A01G031700.1 | Wheat | cytosol | 66.41 | 50.2 |
KRH41453 | Soybean | cytosol, extracellular, nucleus | 73.39 | 50.09 |
Bra006861.1-P | Field mustard | cytosol | 70.8 | 49.37 |
AT5G56680.1 | Thale cress | cytosol | 72.35 | 48.95 |
CDX88584 | Canola | cytosol | 66.67 | 48.77 |
PGSC0003DMT400060831 | Potato | cytosol, extracellular | 71.83 | 47.93 |
Solyc10g080710.1.1 | Tomato | cytosol, nucleus, unclear | 71.83 | 47.93 |
CDY11908 | Canola | plastid | 71.06 | 47.83 |
Bra002799.1-P | Field mustard | cytosol | 70.03 | 47.13 |
CDY32876 | Canola | cytosol, extracellular | 70.03 | 47.13 |
CDY32766 | Canola | cytosol | 70.03 | 47.13 |
AT1G70980.1 | Thale cress | cytosol | 69.51 | 47.11 |
TraesCS2A01G584300.1 | Wheat | cytosol | 67.44 | 46.94 |
CDY53991 | Canola | cytosol | 63.57 | 45.72 |
CDY42212 | Canola | cytosol | 64.86 | 44.19 |
CDY52736 | Canola | endoplasmic reticulum, plastid, vacuole | 44.44 | 34.47 |
VIT_16s0013g00080.t01 | Wine grape | cytosol | 54.78 | 34.19 |
Bra002754.1-P | Field mustard | cytosol | 51.94 | 33.67 |
GSMUA_Achr8P31970_001 | Banana | mitochondrion | 42.64 | 32.48 |
CDY38272 | Canola | cytosol | 38.24 | 31.09 |
GSMUA_AchrUn_... | Banana | cytosol | 42.64 | 29.26 |
VIT_00s0120g00100.t01 | Wine grape | cytosol | 32.56 | 27.16 |
GSMUA_Achr2P18500_001 | Banana | plasma membrane | 54.78 | 25.57 |
KRH38090 | Soybean | cytosol | 16.02 | 25.1 |
GSMUA_Achr3P05380_001 | Banana | cytosol | 23.51 | 22.47 |
GSMUA_Achr10P... | Banana | cytosol | 6.72 | 17.81 |
GSMUA_Achr6P19300_001 | Banana | cytosol | 3.88 | 8.98 |
Protein Annotations
KEGG:00970+6.1.1.22 | MapMan:17.2.3 | Gene3D:3.30.930.10 | InterPro:Asn-tRNA-ligase | InterPro:Asp/Asn-tRNA-synth_IIb | GO:GO:0000166 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004812 | GO:GO:0004816 | GO:GO:0005488 | GO:GO:0005524 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 |
GO:GO:0006418 | GO:GO:0006421 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr6G19310_001 | EnsemblPlants:GSMUA_Achr6P19310_001 | EnsemblPlants:GSMUA_Achr6T19310_001 |
InterPro:IPR006195 | UniProt:M0T8C9 | PFAM:PF00152 | PRINTS:PR01042 | PFscan:PS50862 | PANTHER:PTHR22594 |
PANTHER:PTHR22594:SF44 | SUPFAM:SSF55681 | TIGRFAMs:TIGR00457 | TMHMM:TMhelix | UniParc:UPI000296295C | InterPro:aa-tRNA-synt_II |
InterPro:aa-tRNA-synth_II | SEG:seg | : | : | : | : |
Description
Asparaginyl-tRNA synthetase, cytoplasmic 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G19310_001]
Coordinates
chr6:+:13573995..13576500
Molecular Weight (calculated)
44418.4 Da
IEP (calculated)
5.002
GRAVY (calculated)
-0.037
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDDHMLHVG YFIVCLPDLA VSSCFCCFAF FIIMRNFLLI YKGLQISAVA RIRDELAYAT HTFFRKNGFR YVHTPIITTS DCEGAGEMFQ VTTLFRETVS
101: QLKSSKASEE EISASIDYAG DFFGRQAFLT VSGQLQVETY ACALGNVYTF GPTFRAENSH TTRHLAEFWM VEPEIAFANL EDDMNYAESY VKFLCQWLLD
201: NCIEDMEFLK TFDEAAIERL KLVSSSPFER ISYTKAVQLL KNVTDKEFAI EVEWGIDLAS EHERYLTEVL FKKPVIVYNY PKGIKAFYMK LNDDQKTVAA
301: MDVLVPKVGE LIGGSQREER LDVLVKRIKE SGLPLEPYEW YLDLRRYGTV KHSGFGLGFE RMILFATGME NIRDVIPFPR YPGRADL
101: QLKSSKASEE EISASIDYAG DFFGRQAFLT VSGQLQVETY ACALGNVYTF GPTFRAENSH TTRHLAEFWM VEPEIAFANL EDDMNYAESY VKFLCQWLLD
201: NCIEDMEFLK TFDEAAIERL KLVSSSPFER ISYTKAVQLL KNVTDKEFAI EVEWGIDLAS EHERYLTEVL FKKPVIVYNY PKGIKAFYMK LNDDQKTVAA
301: MDVLVPKVGE LIGGSQREER LDVLVKRIKE SGLPLEPYEW YLDLRRYGTV KHSGFGLGFE RMILFATGME NIRDVIPFPR YPGRADL
001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL
Arabidopsis Description
SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.