Factsheet for VIT_12s0034g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07580.t01	Wine grape	cytosol	67.67	95.31
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	71.67	88.84
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	70.67	87.6
AT1G68420.1	Thale cress	cytosol	15.67	54.02
VIT_11s0016g02680.t01	Wine grape	cytosol	89.67	47.11
VIT_16s0013g00080.t01	Wine grape	cytosol	95.0	45.97
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	55.33	42.89
KRH60164	Soybean	endoplasmic reticulum	72.67	38.45
Os01t0372700-01	Rice	plastid	71.0	38.1
PGSC0003DMT400060831	Potato	cytosol, extracellular	73.67	38.1
KRH41453	Soybean	cytosol, extracellular, nucleus	72.0	38.1
Bra006861.1-P	Field mustard	cytosol	70.33	38.02
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	73.33	37.93
HORVU1Hr1G021130.2	Barley	plastid	70.67	37.46
TraesCS1D01G094600.1	Wheat	cytosol	70.0	37.1
TraesCS1A01G102600.1	Wheat	golgi	70.0	37.1
EER95098	Sorghum	cytosol	69.33	37.08
CDX88584	Canola	cytosol	65.33	37.05
TraesCS1B01G113400.1	Wheat	cytosol	69.67	36.93
CDY32766	Canola	cytosol	70.67	36.87
Bra002799.1-P	Field mustard	cytosol	70.67	36.87
Zm00001d009271_P003	Maize	cytosol	69.0	36.83
EER90985	Sorghum	cytosol	68.67	36.72
CDY11908	Canola	plastid	70.33	36.7
CDY32876	Canola	cytosol, extracellular	70.0	36.52
AT1G70980.1	Thale cress	cytosol	69.0	36.25
CDY53991	Canola	cytosol	65.0	36.25
AT5G56680.1	Thale cress	cytosol	68.67	36.01
VIT_00s0120g00100.t01	Wine grape	cytosol	55.67	35.99
CDY42212	Canola	cytosol	66.67	35.21
TraesCS2A01G584300.1	Wheat	cytosol	60.67	32.73
VIT_00s2558g00010.t01	Wine grape	cytosol	29.33	32.59
TraesCS7D01G028100.1	Wheat	cytosol	48.33	28.6
TraesCS7A01G031700.1	Wheat	cytosol	48.67	28.52
Bra002754.1-P	Field mustard	cytosol	50.33	25.29
CDY38272	Canola	cytosol	37.67	23.74
VIT_00s0229g00020.t01	Wine grape	plastid	43.33	22.26
KRH38090	Soybean	cytosol	17.67	21.46
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	29.0	17.43
VIT_04s0008g03010.t01	Wine grape	cytosol	16.67	9.19
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	2.33	4.83

Protein Annotations

Gene3D:1.10.287.10	MapMan:17.2.3	ProteinID:CCB48770	ProteinID:CCB48770.1	ncoils:Coil	UniProt:F6H977
EMBL:FN595497	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000738	PFAM:PF00152	PFAM:PF00458
PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF34	InterPro:S15_NS1_RNA-bd	SMART:SM00991	SUPFAM:SSF47060
SUPFAM:SSF55681	UniParc:UPI000210A0D9	ArrayExpress:VIT_12s0034g00320	EnsemblPlantsGene:VIT_12s0034g00320	EnsemblPlants:VIT_12s0034g00320.t01	InterPro:WHEP-TRS_dom
InterPro:aa-tRNA-synt_II	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:15849887..15851635

Molecular Weight (calculated)

33506.1 Da

IEP (calculated)

5.814

GRAVY (calculated)

-0.225

Length

300 amino acids

Sequence
(BLAST)

001: MIPAVARICN ALAYATHTFF QNHGFLHAHT PIITTSDCEG AGEMFQVTTL ISDAEKVKKE LIKNPSPSEA DIEAAKALVK EKGEVVAQLK SAKASKGEIT
101: ASVAELNKAK ENLSRLEERS KLKPGILQKD GKIDYSQDFF ARQAFFTVSG QLQVETYACA IGSVYTFGPT FRAEHSHTSR HLAEFWMVEP EIAFADLKDD
201: MNCAEAYVKF LCQWLPDNCI DDMEFMAKIF DKGSIDHLRM VASMPFERIS YAEAIKLLEE AVKKDKKFEN KVEWGIDLAS EHDQILASRQ GHIIAPNPVL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.