Factsheet for Zm00001d009271_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95098	Sorghum	cytosol	97.15	97.33
EER90985	Sorghum	cytosol	96.8	96.97
Os01t0372700-01	Rice	plastid	87.72	88.19
HORVU1Hr1G021130.2	Barley	plastid	83.1	82.51
TraesCS1A01G102600.1	Wheat	golgi	82.92	82.33
TraesCS1B01G113400.1	Wheat	cytosol	82.56	81.98
TraesCS1D01G094600.1	Wheat	cytosol	82.21	81.63
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	52.14	75.71
TraesCS7D01G028100.1	Wheat	cytosol	65.3	72.39
VIT_11s0016g02680.t01	Wine grape	cytosol	73.13	71.98
TraesCS2A01G584300.1	Wheat	cytosol	71.0	71.76
TraesCS7A01G031700.1	Wheat	cytosol	64.23	70.51
VIT_12s0034g00320.t01	Wine grape	cytosol	36.83	69.0
PGSC0003DMT400060831	Potato	cytosol, extracellular	71.17	68.97
CDX88584	Canola	cytosol	64.77	68.81
KRH60164	Soybean	endoplasmic reticulum	69.39	68.78
Bra006861.1-P	Field mustard	cytosol	67.79	68.65
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	70.82	68.62
KRH41453	Soybean	cytosol, extracellular, nucleus	69.22	68.61
VIT_06s0004g07580.t01	Wine grape	cytosol	25.98	68.54
CDY11908	Canola	plastid	68.15	66.61
CDY32766	Canola	cytosol	67.62	66.09
Bra002799.1-P	Field mustard	cytosol	67.62	66.09
CDY32876	Canola	cytosol, extracellular	67.26	65.74
AT5G56680.1	Thale cress	cytosol	66.9	65.73
AT1G70980.1	Thale cress	cytosol	66.37	65.32
CDY42212	Canola	cytosol	63.52	62.85
CDY53991	Canola	cytosol	60.14	62.83
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.05	62.81
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.05	62.81
AT1G68420.1	Thale cress	cytosol	8.72	56.32
Bra002754.1-P	Field mustard	cytosol	53.02	49.92
Zm00001d006377_P001	Maize	mitochondrion	48.4	49.54
Zm00001d021507_P002	Maize	plastid	48.04	49.18
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	42.88	48.3
VIT_16s0013g00080.t01	Wine grape	cytosol	52.85	47.9
VIT_00s0120g00100.t01	Wine grape	cytosol	39.32	47.63
KRH38090	Soybean	cytosol	20.46	46.56
CDY38272	Canola	cytosol	36.65	43.28
Zm00001d008975_P002	Maize	cytosol	20.11	20.73
Zm00001d015168_P001	Maize	extracellular, plasma membrane	19.75	20.33

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	EntrezGene:100281485	MapMan:17.2.3	Gene3D:2.40.50.140	UniProt:A0A1D6FII0
ProteinID:AQK91600.1	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000738	InterPro:IPR006195	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA
PFAM:PF00152	PFAM:PF00458	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PFscan:PS51185
PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0008443599
InterPro:WHEP-TRS_dom	EnsemblPlantsGene:Zm00001d009271	EnsemblPlants:Zm00001d009271_P003	EnsemblPlants:Zm00001d009271_T003	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

Asparaginyl-tRNA synthetase%2C cytoplasmic 3

Coordinates

chr8:-:49785845..49790860

Molecular Weight (calculated)

62795.2 Da

IEP (calculated)

6.071

GRAVY (calculated)

-0.256

Length

562 amino acids

Sequence
(BLAST)

001: MAADAAAAAM SATSLCDDLE PATVRTRIRD VLAAGAARAG DRVVVGGWVR TGREQGKGSF AFLELSDGSC AATLQAIVDA AVHPLARLTA TGTSVLVEGV
101: IKEPPEGTKQ NVELKVSRVL EVGEVDAAVY PLPKGKVKLT LEKLRDVVHL RSRTNTQIGA VARIRHQLAY ASHRFFDENG FLYVHTPIIT TSDCEGAGEM
201: FQVTTLFSQA EKTEKELREN PKPSDSEIEA AKVLVKEKGD VVAQLKAAKA SKQEISTAVD ELNRAKEIVS KLEERFKLKP GIPRKDDGSI AFENDFFKRQ
301: AFLTVSGQLQ VETYACALSS VYTFGPTFRA ENSHTSRHLA EFWMVEPEIA FANLQDDMNC AEKYVQYLCK WLLDHCQEDM EFMVKNYDKS AIERLELVSS
401: TPFVRISYTK AVELLKNVTD KKFDNKVEWG IDLASEHERY LTEDIFKKPV IVYNYPKGIK AFYMRLNDDD KTVAAMDVLV PKVGELIGGS QREERLDVLK
501: QRILDAGLPL EPYEWYLDLR RFGSVKHSGF GLGFERMILF ATGMENIRDV IPFPRYPGRA DL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.