Factsheet for Zm00001d008975_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31524	Sorghum	cytosol	95.41	95.06
Zm00001d015168_P001	Maize	extracellular, plasma membrane	93.76	93.59
Os02t0686400-01	Rice	extracellular	90.64	89.98
TraesCS5D01G165200.1	Wheat	cytosol, golgi	87.16	87.32
TraesCS5A01G160100.2	Wheat	cytosol	87.34	87.18
HORVU5Hr1G050160.1	Barley	cytosol	86.79	86.95
TraesCS5B01G157800.1	Wheat	cytosol	86.79	86.31
HORVU7Hr1G107410.1	Barley	cytosol	75.78	76.62
CDX73541	Canola	cytosol	26.61	69.38
KRH15638	Soybean	nucleus	67.89	68.14
KRH05378	Soybean	nucleus	67.34	67.46
VIT_04s0008g03010.t01	Wine grape	cytosol	67.16	67.28
Solyc05g056250.2.1	Tomato	plastid	66.61	66.73
HORVU6Hr1G022660.15	Barley	cytosol	47.16	64.25
HORVU7Hr1G011750.7	Barley	cytosol, mitochondrion, nucleus	46.24	63.64
AT4G31180.1	Thale cress	cytosol	64.77	63.26
CDY28248	Canola	cytosol	63.67	63.21
CDX68726	Canola	extracellular	63.67	63.21
Bra011251.1-P	Field mustard	cytosol	63.49	63.02
CDY35247	Canola	cytosol	59.45	61.25
AT4G26870.1	Thale cress	cytosol	59.27	60.71
HORVU4Hr1G090760.1	Barley	cytosol	44.4	60.05
CDY14727	Canola	cytosol	58.9	59.78
CDY13418	Canola	cytosol	59.63	58.88
Bra024018.1-P	Field mustard	cytosol	59.63	58.88
CDX72297	Canola	cytosol	59.63	58.66
CDX78190	Canola	cytosol	18.53	57.39
Bra007014.1-P	Field mustard	cytosol	18.53	57.39
GSMUA_Achr10P...	Banana	cytosol	13.95	52.05
CDY06845	Canola	nucleus	46.42	49.9
Zm00001d006377_P001	Maize	mitochondrion	20.92	20.77
Zm00001d021507_P002	Maize	plastid	20.73	20.58
Zm00001d009271_P003	Maize	cytosol	20.73	20.11
Bra011081.1-P	Field mustard	cytosol	56.7	17.46

Protein Annotations

EntrezGene:100279253	MapMan:17.2.4	Gene3D:2.40.50.140	Gene3D:3.30.930.10	ProteinID:AQK91096.1	InterPro:Asp-tRNA_synthase_2
InterPro:Asp/Asn-tRNA-synth_IIb	UniProt:B7ZX71	EMBL:BT053913	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004815	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006422	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016874	GO:GO:0019538	InterPro:IPR006195	HAMAP:MF_02075	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA
PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR43450	PANTHER:PTHR43450:SF1
SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00458	UniParc:UPI00019170EC	EnsemblPlantsGene:Zm00001d008975	EnsemblPlants:Zm00001d008975_P002
EnsemblPlants:Zm00001d008975_T002	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:	:

Description

Aspartate--tRNA ligase 2 cytoplasmic

Coordinates

chr8:-:27990096..27996516

Molecular Weight (calculated)

60643.7 Da

IEP (calculated)

6.154

GRAVY (calculated)

-0.271

Length

545 amino acids

Sequence
(BLAST)

001: MSSEPPPAPS AAAAEGLAAD LSAATLSKKQ QKKDARKAEK AEKAAQRQQQ QQPADAEDPF AANYGDVPVE EIQSKAISGR LWSQIGDLDD SSAGRSVLIR
101: GSLQAIRPVS KKMAFVVLRQ SMSTVQCVLV ASADAGVSTQ MVRFATALSK ESIVDVEGVV SLPKEPLKAT TQQVEIQVRK IYCINRAIPT LPINLEDAAR
201: SEADFEKAEL AGEKLVRVGQ DTRLNYRAID LRTPSNQAIF RIQCQVENKF REFLLSKDFV GIHTPKLISG SSEGGAAVFK LLYNGQPACL AQSPQLHKQM
301: ALCGGFERVF EVGPVFRAEN SNTHRHLCEF VGLDAEMEIK EHYFEVCDII DGLFVSIFKH LTENCNKELE TINRQYPFEP LKYLDKTLKL TYEEGVQMLK
401: EAGTEIEPMG DLNTEAEKKL GRLVREKYDT DFFIMYRYPL AVRPFYTMPC YDNPAYSNSF DVFIRGEEII SGAQRIHTPE LLTKRATECG IDVSTISTYI
501: EVFSYGAPPH GGFGVGLERV VMLFCALNNI RKTSMFPRDP QRLVP

Best Arabidopsis Sequence Match ( AT4G31180.2 )
(BLAST)

001: MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD
101: LVEEMLESEV LIRGRVHTNR PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL TGTTQQVEIQ VRKVYCINKS
201: LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP
301: ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT
401: LRLTFEEGVQ MLKEAGVEVD PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE EIISGAQRVH IPEVLEQRAG
501: ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL NNIRKTSLFP RDPQRLSP

Arabidopsis Description

IBI1Aspartate--tRNA ligase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M084]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.