Factsheet for Os02t0686400-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 26072143

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G165200.1	Wheat	cytosol, golgi	90.16	90.99
KXG31524	Sorghum	cytosol	90.53	90.86
HORVU5Hr1G050160.1	Barley	cytosol	89.98	90.81
TraesCS5A01G160100.2	Wheat	cytosol	90.16	90.66
Zm00001d008975_P002	Maize	cytosol	89.98	90.64
TraesCS5B01G157800.1	Wheat	cytosol	90.16	90.33
Zm00001d015168_P001	Maize	extracellular, plasma membrane	89.62	90.11
HORVU7Hr1G107410.1	Barley	cytosol	77.41	78.85
CDX73541	Canola	cytosol	27.32	71.77
KRH15638	Soybean	nucleus	69.4	70.17
KRH05378	Soybean	nucleus	69.22	69.85
VIT_04s0008g03010.t01	Wine grape	cytosol	67.76	68.38
Solyc05g056250.2.1	Tomato	plastid	67.76	68.38
HORVU6Hr1G022660.15	Barley	cytosol	47.72	65.5
HORVU7Hr1G011750.7	Barley	cytosol, mitochondrion, nucleus	46.45	64.39
AT4G31180.1	Thale cress	cytosol	65.39	64.34
CDY28248	Canola	cytosol	63.93	63.93
CDX68726	Canola	extracellular	63.93	63.93
Bra011251.1-P	Field mustard	cytosol	63.75	63.75
Bra007014.1-P	Field mustard	cytosol	20.04	62.5
CDX78190	Canola	cytosol	20.04	62.5
AT4G26870.1	Thale cress	cytosol	59.93	61.84
Os02t0139600-01	Rice	cytosol	39.71	61.76
CDY35247	Canola	cytosol	59.38	61.63
HORVU4Hr1G090760.1	Barley	cytosol	44.81	61.04
CDY14727	Canola	cytosol	59.2	60.52
Bra024018.1-P	Field mustard	cytosol	60.84	60.51
CDY13418	Canola	cytosol	60.84	60.51
CDX72297	Canola	cytosol	60.29	59.75
GSMUA_Achr10P...	Banana	cytosol	14.39	54.11
CDY06845	Canola	nucleus	46.27	50.1
Os07t0485400-01	Rice	cytosol	9.65	24.2
Os01t0372700-01	Rice	plastid	20.95	20.57
Bra011081.1-P	Field mustard	cytosol	56.28	17.46
Os12t0414500-01	Rice	plasma membrane	16.21	14.47

Protein Annotations

MapMan:17.2.4	Gene3D:2.40.50.140	Gene3D:3.30.930.10	EntrezGene:4330354	EMBL:AK098984	InterPro:Asp-tRNA_synthase_2
InterPro:Asp/Asn-tRNA-synth_IIb	ProteinID:BAD07576.1	ProteinID:BAF09684.1	ProteinID:BAS80339.1	ncoils:Coil	ProteinID:EEE57599.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004815
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006422	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	GO:GO:0019538	InterPro:IPR006195	HAMAP:MF_02075
InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	EnsemblPlantsGene:Os02g0686400	EnsemblPlants:Os02t0686400-01	PFAM:PF00152	PFAM:PF01336
PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR43450	PANTHER:PTHR43450:SF1	UniProt:Q6ZHC3	SUPFAM:SSF50249
SUPFAM:SSF55681	TIGRFAMs:TIGR00458	UniParc:UPI000023672F	RefSeq:XP_015625264.1	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

Similar to Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS). (Os02t0686400-01);Similar to Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS). (Os02t0686400-02)

Coordinates

chr2:+:28113631..28118698

Molecular Weight (calculated)

60865.8 Da

IEP (calculated)

6.220

GRAVY (calculated)

-0.277

Length

549 amino acids

Sequence
(BLAST)

001: MSSEPPPDAA AAAASSAGDL AADLSSATIS KKQLKKDARK AEKAEKASQR QQQQQPQADA DDPFAANYGD VPVEEIQSKT ISGRVWTEIG GLDEAAAGRS
101: VLIRGAAQAI RPVSKKMAFV VLRESMSTVQ CVLVASADAG VSTQMVRFAT SLSKESIVDV EGVVSLPKEP LKATTQQVEI QVRKIYCINR AIPTLPINLE
201: DASRSEAEIE KAEQAGEKLV RVGQDTRLNY RAIDLRTPAN QAIFRIQCQV ENKFREYFLS KNFVGIHSPK LIAGSSEGGA AVFKLQYNGQ PACLAQSPQL
301: YKQMAICGGF ERVFEVGPVF RAENSNTHRH LCEFVGLDAE MEIKEHYFEV CDIIDGLFVA IFKHLNENCK KELETINRQY PFEPLKYLEK TLKLTYEEGI
401: QMLKEAGTEI EPMGDLNTEA EKKLGRLVKE KYGTEFFILY RYPLAVRPFY TMPCYDNPAY SNSFDVFIRG EEIISGAQRI HLPELLTKRA TECGIDASTI
501: SSYIESFSYG APPHGGFGVG LERVVMLFCA LNNIRKTSLF PRDPQRLVP

Best Arabidopsis Sequence Match ( AT4G31180.2 )
(BLAST)

001: MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD
101: LVEEMLESEV LIRGRVHTNR PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL TGTTQQVEIQ VRKVYCINKS
201: LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP
301: ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT
401: LRLTFEEGVQ MLKEAGVEVD PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE EIISGAQRVH IPEVLEQRAG
501: ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL NNIRKTSLFP RDPQRLSP

Arabidopsis Description

IBI1Aspartate--tRNA ligase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M084]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.