CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35247	Canola	cytosol	91.06	92.44
AT4G26870.1	Thale cress	cytosol	87.15	87.97
CDX73541	Canola	cytosol	29.61	76.08
CDY06845	Canola	nucleus	71.51	75.74
CDX68726	Canola	extracellular	74.67	73.04
CDY28248	Canola	cytosol	74.49	72.86
GSMUA_Achr3P05380_001	Banana	cytosol	53.07	70.37
CDY13418	Canola	cytosol	70.95	69.02
CDX72297	Canola	cytosol	69.83	67.69
CDX78190	Canola	cytosol	21.97	67.05
Solyc05g056250.2.1	Tomato	plastid	63.13	62.32
VIT_04s0008g03010.t01	Wine grape	cytosol	62.38	61.58
KRH15638	Soybean	nucleus	62.01	61.33
KRH05378	Soybean	nucleus	62.01	61.21
Os02t0686400-01	Rice	extracellular	60.52	59.2
Zm00001d008975_P002	Maize	cytosol	59.78	58.9
TraesCS5D01G165200.1	Wheat	cytosol, golgi	59.59	58.82
HORVU5Hr1G050160.1	Barley	cytosol	59.59	58.82
KXG31524	Sorghum	cytosol	59.78	58.68
TraesCS5A01G160100.2	Wheat	cytosol	59.59	58.61
Zm00001d015168_P001	Maize	extracellular, plasma membrane	59.59	58.61
TraesCS5B01G157800.1	Wheat	cytosol	59.59	58.39
OQU84347	Sorghum	cytosol	52.7	56.94
HORVU7Hr1G107410.1	Barley	cytosol	55.31	55.1
TraesCS5D01G333800.2	Wheat	cytosol	54.38	52.52
TraesCS5A01G327900.1	Wheat	cytosol	53.45	51.9
TraesCS5B01G327800.1	Wheat	cytosol, plastid	52.89	51.64
Os02t0139600-01	Rice	cytosol	33.89	51.56
HORVU5Hr1G083090.1	Barley	cytosol, plastid	52.33	51.28
GSMUA_Achr10P...	Banana	cytosol	13.04	47.95
TraesCS7B01G222700.1	Wheat	cytosol	27.37	46.82
HORVU6Hr1G022660.15	Barley	cytosol	32.03	43.0
HORVU7Hr1G011750.7	Barley	cytosol, mitochondrion, nucleus	31.47	42.68
TraesCS1A01G111100.1	Wheat	cytosol	41.53	42.0
HORVU4Hr1G090760.1	Barley	cytosol	30.35	40.45
HORVU1Hr1G024420.4	Barley	mitochondrion	32.59	40.14
CDY08000	Canola	cytosol	6.89	23.87
CDX88584	Canola	cytosol	21.04	21.36
CDY32876	Canola	cytosol, extracellular	22.16	20.7
CDY11908	Canola	plastid	22.16	20.7
CDY32766	Canola	cytosol	21.97	20.52
CDY53991	Canola	cytosol	20.48	20.45
CDY42212	Canola	cytosol	21.6	20.42
CDY35583	Canola	plastid	20.67	19.82
CDY50134	Canola	plastid	20.67	19.75
CDY58174	Canola	plastid	20.48	19.57
CDY42978	Canola	plastid	20.48	19.54
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	16.95	18.24
CDY38272	Canola	cytosol	14.71	16.6
CDY07998	Canola	cytosol	18.62	16.23
CDY35930	Canola	cytosol	18.99	16.09
CDX74047	Canola	cytosol	18.62	16.05
CDY28051	Canola	cytosol	18.81	15.96

Protein Annotations

MapMan:17.2.4	Gene3D:2.40.50.140	Gene3D:3.30.930.10	GO:A0A078FPD4	UniProt:A0A078FPD4	InterPro:Asp-tRNA_synthase_2
InterPro:Asp/Asn-tRNA-synth_IIb	EnsemblPlants:CDY14727	ProteinID:CDY14727	ProteinID:CDY14727.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004815	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006422	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00084554001	InterPro:IPR006195	HAMAP:MF_02075	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA
PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR43450	SUPFAM:SSF50249
SUPFAM:SSF55681	TIGRFAMs:TIGR00458	UniParc:UPI0004EF3E97	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg

Description

BnaC05g19840DBnaC05g19840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPD4]

Coordinates

chrLK032046:+:651380..654204

Molecular Weight (calculated)

60711.3 Da

IEP (calculated)

7.554

GRAVY (calculated)

-0.313

Length

537 amino acids

Sequence
(BLAST)

001: MVEPEVLEES GEKMSKKAAK KRAATLKKRL YRKKEREEAT SSSSSLPEDE SFSSNYGDVT PKSAAGRSWR EAVEGKELTD VSYLVEEILG SEVSLRGRVH
101: NHRLVAKILF VILRESGFTV QCVVEEARVG TSMLNFVKQL SHESVVELIG LVSLPKKPLT ATSQQVEIHV TKMYCLSRSL LNLPLAVVDA ARSEADIEKS
201: VKDGKPAARV LQDTRLNNRP LDLRTPANQA LFRIQCHVQI AFREFLLSKG FLEIHTPKLM AGSSEGGSAV FRLDYKGQPA CLAQSPQLHK QMAICGDMRR
301: VFEVGPVFRA EDSFTHRHLC EFVGLDVEME IRMHYSEIMD LVGDLFPFIF TKIEERCPKE LESVRRQYPF HSLKFLPQTL RLTFAEGIQM LKEAGEEVDP
401: LGDLNTESEK KLGQLVLEKY KTEFYMLHRY PSAVRPFYTM PCEDDSNYSN SFDVFIRGEE IISGAQRIHD PELLEKRARE CGIDVKTIST YIDAFRYGAP
501: PHGGFGAGLE RVVMLLCALN NIRKTSLFPR DPKRLAP

Best Arabidopsis Sequence Match ( AT4G26870.1 )
(BLAST)

001: MVGSEVLEEC GEKISKKESK KRAAKLEKLL RKQEREEATS SSLSLEEEDE SCSSNYGDVT TNELQSAVEG KELTDVSNLV EEIVGSEVSI RGRLHKNRLV
101: GTKLFVILRE SGFTVQCVVE ETRVGANMIK FVKQLSRESV VELIGVVSHP KKPLTGTTQQ VEIHVRKMYC LSRSLPNLPL VVEDAARSES DIEKSGKDGK
201: QAARVLQDTR LNNRVLDIRT PANQAIFRIQ CQVQIAFREY LQSKGFLEIH TPKLIAGSSE GGSAVFRLDY KGQPACLAQS PQLHKQMAIC GDMRRVFEVG
301: PVFRAEDSFT HRHLCEFVGL DVEMEIRMHY SEIMDLVGEL FPFIFTKIEE RCPKELESVR KQYPFQSLKF LPQTLRLTFA EGIQMLKEAG EEVDPLGDLN
401: TESERKLGQL VLEKYKTEFY MLHRYPSAVR PFYTMPYEND SNYSNSFDVF IRGEEIMSGA QRIHDPELLE KRARECGIDV KTISTYIDAF RYGAPPHGGF
501: GVGLERVVML LCALNNIRKT SLFPRDSQRL TP

Arabidopsis Description

Aspartate--tRNA ligase 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q8H104]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.