Factsheet for TraesCS5D01G165200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G160100.2	Wheat	cytosol	99.26	98.9
HORVU5Hr1G050160.1	Barley	cytosol	98.71	98.71
TraesCS5B01G157800.1	Wheat	cytosol	98.71	97.99
Os02t0686400-01	Rice	extracellular	90.99	90.16
KXG31524	Sorghum	cytosol	87.87	87.39
Zm00001d008975_P002	Maize	cytosol	87.32	87.16
Zm00001d015168_P001	Maize	extracellular, plasma membrane	87.32	87.0
TraesCS5D01G333800.2	Wheat	cytosol	71.32	69.78
CDX73541	Canola	cytosol	26.65	69.38
KRH15638	Soybean	nucleus	68.2	68.32
VIT_04s0008g03010.t01	Wine grape	cytosol	68.2	68.2
KRH05378	Soybean	nucleus	68.2	68.2
Solyc05g056250.2.1	Tomato	plastid	67.28	67.28
CDX68726	Canola	extracellular	64.89	64.3
CDY28248	Canola	cytosol	64.89	64.3
Bra011251.1-P	Field mustard	cytosol	64.71	64.12
AT4G31180.1	Thale cress	cytosol	65.07	63.44
CDY35247	Canola	cytosol	59.38	61.06
CDX78190	Canola	cytosol	19.67	60.8
Bra007014.1-P	Field mustard	cytosol	19.67	60.8
CDY13418	Canola	cytosol	61.4	60.51
Bra024018.1-P	Field mustard	cytosol	61.4	60.51
AT4G26870.1	Thale cress	cytosol	59.01	60.34
CDX72297	Canola	cytosol	60.85	59.75
CDY14727	Canola	cytosol	58.82	59.59
GSMUA_Achr10P...	Banana	cytosol	14.15	52.74
CDY06845	Canola	nucleus	45.77	49.11
TraesCS7D01G028100.1	Wheat	cytosol	20.59	22.09
TraesCS2D01G235900.1	Wheat	mitochondrion	21.14	21.7
TraesCS1D01G094600.1	Wheat	cytosol	20.96	20.14
Bra011081.1-P	Field mustard	cytosol	56.43	17.34

Protein Annotations

MapMan:17.2.4	Gene3D:2.40.50.140	Gene3D:3.30.930.10	InterPro:Asp-tRNA_synthase_2	InterPro:Asp/Asn-tRNA-synth_IIb	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004815	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006422	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	HAMAP:MF_02075	InterPro:NA-bd_OB-fold	PFAM:PF00152
PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR43450	PANTHER:PTHR43450:SF1	SUPFAM:SSF50249	SUPFAM:SSF55681
TIGRFAMs:TIGR00458	EnsemblPlantsGene:TraesCS5D01G165200	EnsemblPlants:TraesCS5D01G165200.1	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	TIGR:cd00776
TIGR:cd04320	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:256729608..256734584

Molecular Weight (calculated)

60745.7 Da

IEP (calculated)

6.160

GRAVY (calculated)

-0.310

Length

544 amino acids

Sequence
(BLAST)

001: MSSEPAPASA STEELEADLS AATISKKQLK KDARKAEKAG KASQRQQQQQ PQAEEADLFA ANYGDVPVEE IQSKAISGRS WTDIGDLDEA AAGRSVLIRG
101: SAQTLRPVSK KMAFVVLRQS MSTVQCVLVA SADSGVSTQM VRFATSLSKE SIVDVEGVVT LPKEPLKATT QQVEIQVRKV YCINRAIPTL PINLEDAARS
201: EAEFEKAEQN GEKLVRVLQD TRLNYRAIDL RTPANQAIFR IQCHVENKFR EFLFSENFIG IHSPKLIGGS SEGGASVFKL EYNGQPACLA QSPQLYKQMS
301: ICGGFGRVFE VGPVFRAEKS NTHRHLCEFI GLDAEMEIKE HYFEVCDIID GLFVAIFKHL NENCQKELET INRQYPFEPL KYLEKTLKLT YEEGIKMLKE
401: AGTEIEPMGD LNTEAEKKLG RLVKEKYGTE FFILYRYPLA VRPFYTMPCY DDPAYSNSFD VFIRGEEIIS GAQRIHTPEL LRKRAIECGI DASTIASYIE
501: SFSYGAPPHG GFGVGLERVV MLFCALNNIR KTSLFPRDPQ RLAP

Best Arabidopsis Sequence Match ( AT4G31180.2 )
(BLAST)

001: MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD
101: LVEEMLESEV LIRGRVHTNR PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL TGTTQQVEIQ VRKVYCINKS
201: LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP
301: ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT
401: LRLTFEEGVQ MLKEAGVEVD PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE EIISGAQRVH IPEVLEQRAG
501: ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL NNIRKTSLFP RDPQRLSP

Arabidopsis Description

IBI1Aspartate--tRNA ligase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M084]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.