Factsheet for TraesCS2D01G235900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G231500.2	Wheat	cytosol	79.06	98.82
TraesCS2B01G255900.2	Wheat	mitochondrion	99.25	98.13
HORVU2Hr1G049240.1	Barley	mitochondrion	96.6	95.7
Os07t0485400-01	Rice	cytosol	35.66	86.3
Zm00001d021507_P002	Maize	plastid	88.87	85.79
KXG36232	Sorghum	mitochondrion	88.87	85.33
Zm00001d006377_P001	Maize	mitochondrion	88.11	85.06
Bra026243.1-P	Field mustard	plastid	74.91	70.52
CDY42978	Canola	plastid	74.53	70.16
CDY58174	Canola	plastid	74.34	70.11
Bra021059.1-P	Field mustard	plastid	74.34	70.11
KRH04132	Soybean	plastid	72.45	69.82
KRH57405	Soybean	plastid	72.45	69.69
Solyc03g019940.2.1	Tomato	plastid	74.91	69.53
CDY50134	Canola	plastid	73.58	69.39
PGSC0003DMT400039341	Potato	mitochondrion, plastid	74.72	69.35
VIT_00s0229g00020.t01	Wine grape	plastid	75.47	68.49
CDY35583	Canola	plastid	72.08	68.21
AT4G17300.2	Thale cress	cytosol, plastid	73.96	66.78
TraesCS7D01G028100.1	Wheat	cytosol	47.55	49.7
GSMUA_Achr2P18500_001	Banana	plasma membrane	76.79	49.1
TraesCS1D01G094600.1	Wheat	cytosol	50.75	47.53
TraesCS5D01G165200.1	Wheat	cytosol, golgi	21.7	21.14
TraesCS5D01G333800.2	Wheat	cytosol	21.7	20.68

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	Gene3D:2.40.50.140	Gene3D:3.30.930.10	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	HAMAP:MF_00534	InterPro:NA-bd_OB-fold
InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR22594
PANTHER:PTHR22594:SF44	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457	EnsemblPlantsGene:TraesCS2D01G235900	EnsemblPlants:TraesCS2D01G235900.1
InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	TIGR:cd00776	TIGR:cd04318	SEG:seg	:

Description

No Description!

Coordinates

chr2D:-:226532460..226543766

Molecular Weight (calculated)

59103.1 Da

IEP (calculated)

6.771

GRAVY (calculated)

-0.242

Length

530 amino acids

Sequence
(BLAST)

001: MAAAAAACRL LRLAPRRLRN PRHSLFRTPL ALSSGWRRYC AAAATPTGDA VGEFRRRIRV AEVKGGEDQG AAWVGKELTV RGWVRTCRAQ RTVTFVEVND
101: GSCLSNMQCV LTPETEGYGQ IDSINTGASV LVEGVVASSQ GGKQKVELKV SKIIVIGESD PTSFPIQKKR ASREFLRTVA HLRPRTNTFG AVARVRNALA
201: YATHKFFQDS GFIWVSSPII TASDCEGAGE QFYVTTLLSN SAEGGCLVNS IPSKDGRVDW SQDFFCKPAF LTVSGQLNGE TYASALSDIY TFGPTFRAEN
301: SNTSRHLAEF WMIEPELAFA DLNDDMACAS AYLQYVVKYI LENCKEDMDF FDTWVEKGII DRLNNVAEKN FVQMSYSDAI KLLIGSNKKF EFPVKWGLDL
401: QSEHERYITE VAFGGSPVII RDYPKEIKAF YMRQNDDGKT VAAMDLLVPR VGELIGGSQR EERLDYLEAR LDESNLNKDS YWWYLDLRRY GSVPHAGFGL
501: GFERLVQFAT GIDNIRDAIP FPRVPGSAEF

Best Arabidopsis Sequence Match ( AT4G17300.2 )
(BLAST)

001: MFQYEEEDSR NPKTVNDSIT MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF

Arabidopsis Description

NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.