CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04132	Soybean	plastid	97.46	97.64
TraesCS2A01G231500.2	Wheat	cytosol	62.43	81.13
Os07t0485400-01	Rice	cytosol	30.49	76.71
Bra021059.1-P	Field mustard	plastid	75.5	74.02
CDY58174	Canola	plastid	75.14	73.67
Bra026243.1-P	Field mustard	plastid	74.95	73.36
CDY50134	Canola	plastid	74.77	73.31
CDY42978	Canola	plastid	74.41	72.82
VIT_00s0229g00020.t01	Wine grape	plastid	77.13	72.77
CDY35583	Canola	plastid	73.68	72.5
TraesCS2D01G235900.1	Wheat	mitochondrion	69.69	72.45
TraesCS2B01G255900.2	Wheat	mitochondrion	70.42	72.39
HORVU2Hr1G049240.1	Barley	mitochondrion	70.05	72.15
Zm00001d021507_P002	Maize	plastid	71.14	71.4
Solyc03g019940.2.1	Tomato	plastid	73.87	71.28
PGSC0003DMT400039341	Potato	mitochondrion, plastid	73.68	71.1
Zm00001d006377_P001	Maize	mitochondrion	70.6	70.86
AT4G17300.2	Thale cress	cytosol, plastid	75.14	70.53
KXG36232	Sorghum	mitochondrion	70.24	70.11
KRH60164	Soybean	endoplasmic reticulum	49.73	48.32
KRH41453	Soybean	cytosol, extracellular, nucleus	49.55	48.15
GSMUA_Achr2P18500_001	Banana	plasma membrane	71.87	47.77
KRH38090	Soybean	cytosol	15.06	33.6
KRH07367	Soybean	cytosol	35.57	31.41
KRH66191	Soybean	plastid	35.21	30.36
KRH15638	Soybean	nucleus	22.32	22.65
KRH05378	Soybean	nucleus	22.14	22.43

Protein Annotations

KEGG:00970+6.1.1.22	EntrezGene:100801732	MapMan:17.2.3	Gene3D:2.40.50.140	EMBL:ACUP02002832	InterPro:Asn-tRNA-ligase
InterPro:Asp/Asn-tRNA-synth_IIb	EnsemblPlantsGene:GLYMA_05G059500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812
GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:I1K0Q4	InterPro:IPR006195
EnsemblPlants:KRH57405	ProteinID:KRH57405	ProteinID:KRH57405.1	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	PFAM:PF00152
PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR22594	PANTHER:PTHR22594:SF45	SUPFAM:SSF50249	SUPFAM:SSF55681
TIGRFAMs:TIGR00457	UniParc:UPI0002339A01	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:5555371..5561847

Molecular Weight (calculated)

61309.8 Da

IEP (calculated)

6.208

GRAVY (calculated)

-0.190

Length

551 amino acids

Sequence
(BLAST)

001: MAVSIGVGAT KAISMAIAAR HLGTKPYAAA ATTTALALLS LHKPLFLPHS SPFSSRRAFC AATLRTADNR VQQFRRKLRV SEIKEGDGAD VFGRNLVVQG
101: WVRTLRIQSI VTFLEINDGS CLSNMQCVLN SEAEGYDQVE SGLVTTGASV WVQGVVVKSQ GSKQKVELKV NKIVLIGKSD PSFPIQKKRA SREFLRTKAH
201: LRARTNTFGA VARVRNALAY ATHKFFQENG FVWVSSPIIT ASDCEGAGEQ FCVTTLIPSS HETTDSPVDA IPKTNDGLID WSQDFFGKPA FLTVSGQLNG
301: ETYATSLSDV YTFGPTFRAE NSNTSRHLAE FWMIEPELAF ADLNDDMACA TAYLQFVIRH VLDNCKEDME FFDTWINKGI IDRLSDVADK DVVQITYTEA
401: IDLLSGANKK FEFPVKWGSD LQSEHERYIT EEAFSGCPVI IRDYPKDIKA FYMRQNDDGR TVAAMDMLVP GIGELIGGSQ REERLEYLEA RLDDLKLNKD
501: AYWWYLDLRR YGSVPHAGFG LGFERLVQFA TGMDNIRDVI PFPRTPGSAE F

Best Arabidopsis Sequence Match ( AT4G17300.2 )
(BLAST)

001: MFQYEEEDSR NPKTVNDSIT MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF

Arabidopsis Description

NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.