Factsheet for Zm00001d006377_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36232	Sorghum	mitochondrion	96.72	96.2
Zm00001d021507_P002	Maize	plastid	96.17	96.17
TraesCS2A01G231500.2	Wheat	cytosol	70.67	91.51
TraesCS2D01G235900.1	Wheat	mitochondrion	85.06	88.11
TraesCS2B01G255900.2	Wheat	mitochondrion	85.61	87.69
Os07t0485400-01	Rice	cytosol	34.79	87.21
HORVU2Hr1G049240.1	Barley	mitochondrion	84.88	87.1
Bra026243.1-P	Field mustard	plastid	74.32	72.47
CDY42978	Canola	plastid	74.13	72.29
Solyc03g019940.2.1	Tomato	plastid	74.86	71.98
PGSC0003DMT400039341	Potato	mitochondrion, plastid	74.68	71.8
CDY58174	Canola	plastid	72.86	71.17
Bra021059.1-P	Field mustard	plastid	72.86	71.17
CDY35583	Canola	plastid	72.31	70.89
KRH04132	Soybean	plastid	70.86	70.73
VIT_00s0229g00020.t01	Wine grape	plastid	75.23	70.72
KRH57405	Soybean	plastid	70.86	70.6
CDY50134	Canola	plastid	72.13	70.46
AT4G17300.2	Thale cress	cytosol, plastid	72.5	67.8
GSMUA_Achr2P18500_001	Banana	plasma membrane	75.59	50.06
Zm00001d009271_P003	Maize	cytosol	49.54	48.4
Zm00001d015168_P001	Maize	extracellular, plasma membrane	20.95	21.06
Zm00001d008975_P002	Maize	cytosol	20.77	20.92

Protein Annotations

KEGG:00970+6.1.1.22	EntrezGene:100217176	MapMan:17.2.3	Gene3D:2.40.50.140	Gene3D:3.30.930.10	UniProt:A0A1D6EVR1
InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	GO:GO:0019538
InterPro:IPR006195	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	ProteinID:ONM23659.1	PFAM:PF00152
PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR22594	PANTHER:PTHR22594:SF44	SUPFAM:SSF50249
SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0004DEABE8	EnsemblPlantsGene:Zm00001d006377	EnsemblPlants:Zm00001d006377_P001	EnsemblPlants:Zm00001d006377_T001
InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:

Description

Asparagine--tRNA ligase chloroplastic/mitochondrial

Coordinates

chr2:-:206076000..206098072

Molecular Weight (calculated)

60807.2 Da

IEP (calculated)

6.061

GRAVY (calculated)

-0.223

Length

549 amino acids

Sequence
(BLAST)

001: MAAAAAARIL RLAPRRIQVP KTSPLAALSF PLPRTAPIAA ASGRRQRFCA VAQAPAPAAA ATGAAGEAVG EFRKRLRVAD VKGGEDEGAA WVGKELAVRG
101: WVRTCRAQRT ITFVEVNDGS CLSNMQCVLT PETEGYDQID SVTTGASVLV EGVVASSQGG KQKVELKVSK ITVIGKSDPT SFPIQKKRAS REFLRTVAHL
201: RPRTNTFGAV ARVRNTLAYA THKFFQDNGF VWVSSPIITA SDCEGAGEQF YVTTLLSNSA DGGSLLKDIP ATKDGRVDWS QDFFCKPAFL TVSGQLNGET
301: YASALSDIYT FGPTFRAENS NTSRHLAEFW MIEPELAFAD LNDDMACATA YLQYVVKYIL ENCKEDMDFF NTWIEKGIID RLNDVVEKNF VHLSYTDAVE
401: LLLGSKKEFE FPVKWGLDLQ SEHERYITEV AFGGRPVIIR DYPKEIKAFY MRENDDGKTV AAMDLLVPRV GELIGGSQRE ERLDYLEARL DEQNLNKESY
501: WWYLDLRRYG SVPHAGFGLG FERLVQFATG MDNIRDTIPF PRVPGSAEF

Best Arabidopsis Sequence Match ( AT4G17300.2 )
(BLAST)

001: MFQYEEEDSR NPKTVNDSIT MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF

Arabidopsis Description

NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.