CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021059.1-P	Field mustard	plastid	97.86	97.86
CDY58174	Canola	plastid	96.8	96.8
CDY42978	Canola	plastid	91.99	91.83
CDY35583	Canola	plastid	88.97	89.29
AT4G17300.2	Thale cress	cytosol, plastid	91.81	87.9
TraesCS2A01G231500.2	Wheat	cytosol	60.5	80.19
VIT_00s0229g00020.t01	Wine grape	plastid	78.47	75.51
KRH04132	Soybean	plastid	73.31	74.91
Os07t0485400-01	Rice	cytosol	29.18	74.89
KRH57405	Soybean	plastid	73.31	74.77
Solyc03g019940.2.1	Tomato	plastid	75.27	74.08
PGSC0003DMT400039341	Potato	mitochondrion, plastid	74.91	73.73
TraesCS2D01G235900.1	Wheat	mitochondrion	69.39	73.58
TraesCS2B01G255900.2	Wheat	mitochondrion	69.57	72.95
Zm00001d021507_P002	Maize	plastid	70.64	72.31
KXG36232	Sorghum	mitochondrion	71.0	72.28
HORVU2Hr1G049240.1	Barley	mitochondrion	68.68	72.15
Zm00001d006377_P001	Maize	mitochondrion	70.46	72.13
CDX88584	Canola	cytosol	47.51	50.47
GSMUA_Achr2P18500_001	Banana	plasma membrane	72.42	49.1
CDY08000	Canola	cytosol	13.52	49.03
CDY11908	Canola	plastid	49.82	48.7
CDY32766	Canola	cytosol	49.11	48.0
CDY32876	Canola	cytosol, extracellular	48.75	47.65
CDY53991	Canola	cytosol	44.31	46.28
CDY42212	Canola	cytosol	46.09	45.6
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	35.23	39.68
CDY38272	Canola	cytosol	30.25	35.71
CDY07998	Canola	cytosol	35.41	32.31
CDY28051	Canola	cytosol	36.3	32.23
CDY35930	Canola	cytosol	36.12	32.02
CDX74047	Canola	cytosol	35.05	31.62
CDX73541	Canola	cytosol	8.54	22.97
CDY35247	Canola	cytosol	20.46	21.74
CDX68726	Canola	extracellular	21.17	21.68
CDY28248	Canola	cytosol	21.0	21.49
CDX72297	Canola	cytosol	21.17	21.48
CDY13418	Canola	cytosol	21.0	21.38
CDY14727	Canola	cytosol	19.75	20.67
CDY06845	Canola	nucleus	15.3	16.96
CDX78190	Canola	cytosol	4.27	13.64

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	Gene3D:2.40.50.140	GO:A0A078IL99	UniProt:A0A078IL99	InterPro:Asn-tRNA-ligase
InterPro:Asp/Asn-tRNA-synth_IIb	EnsemblPlants:CDY50134	ProteinID:CDY50134	ProteinID:CDY50134.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00095959001	InterPro:IPR006195	HAMAP:MF_00534	InterPro:NA-bd_OB-fold
InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR22594
PANTHER:PTHR22594:SF44	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0004EE42C3	InterPro:aa-tRNA-synt_II
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

BnaCnng18830DBnaCnng18830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IL99]

Coordinates

chrLK032883:+:81329..84535

Molecular Weight (calculated)

63083.2 Da

IEP (calculated)

6.983

GRAVY (calculated)

-0.263

Length

562 amino acids

Sequence
(BLAST)

001: MAAKFLPATT LRLTPFSTLR FSSFFHISKP LFRPLRRPFF EGFPANARRR CFCTAVSEST GSGEGKKVDN SYENRFGSKV GEFRRKLKIA EVKGGADQGL
101: GRVGQSLSIM GWVRTLRSQS SVTFIEINDG SCLSNLQCVM NPDAEGYHQV ESGSVLTGAS ISVQGTIVAS QGTKQKVELK VDKIIVVGKC DSSYPIQKKR
201: VSREFLRTKA HLRPRTNTFG AVARVRNALA YATHKFFQES GFVWVASPII TASDCEGAGE QFCVTTLIPS SHETTDSSID AIPKTKGGLV DWSQDFFGKP
301: AFLTVSGQLN GETYATALSD VYMFGPTFRA ENSNTSRHLA EFWMIEPELA FADLNDDMAC ATAYLQYVVK YVLDNCKEDM EFFDTWIDKG IIHRLSEVVE
401: KEFLQLGYTD AIELLLKANK KFEFPVKWGL DLQSEHERYI TEEAFGGRPV IIRDYPKEIK AFYMRENDDG KTVAAMDMLV PRIGELIGGS QREERLEVLE
501: ARLDELKLDK ESYWWYLDLR RYGSVPHAGF GLGFERLVQF ATGIDNIRDV IPFPRSPGSA DF

Best Arabidopsis Sequence Match ( AT4G17300.2 )
(BLAST)

001: MFQYEEEDSR NPKTVNDSIT MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF

Arabidopsis Description

NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.