CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 29364282

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28248	Canola	cytosol	99.09	99.09
CDY13418	Canola	cytosol	86.16	85.69
CDX72297	Canola	cytosol	84.7	83.94
CDY35247	Canola	cytosol	73.41	76.18
CDX78190	Canola	cytosol	24.41	76.14
CDX73541	Canola	cytosol	28.78	75.6
CDY14727	Canola	cytosol	73.04	74.67
GSMUA_Achr3P05380_001	Banana	cytosol	52.82	71.6
Solyc05g056250.2.1	Tomato	plastid	66.85	67.46
KRH15638	Soybean	nucleus	66.67	67.4
KRH05378	Soybean	nucleus	66.3	66.91
VIT_04s0008g03010.t01	Wine grape	cytosol	65.39	65.99
TraesCS5D01G165200.1	Wheat	cytosol, golgi	64.3	64.89
TraesCS5A01G160100.2	Wheat	cytosol	64.3	64.65
HORVU5Hr1G050160.1	Barley	cytosol	63.93	64.52
CDY06845	Canola	nucleus	59.56	64.5
TraesCS5B01G157800.1	Wheat	cytosol	64.12	64.23
Os02t0686400-01	Rice	extracellular	63.93	63.93
Zm00001d008975_P002	Maize	cytosol	63.21	63.67
KXG31524	Sorghum	cytosol	63.21	63.44
Zm00001d015168_P001	Maize	extracellular, plasma membrane	62.84	63.19
HORVU7Hr1G107410.1	Barley	cytosol	59.2	60.3
OQU84347	Sorghum	cytosol	53.19	58.75
TraesCS5D01G333800.2	Wheat	cytosol	57.38	56.65
TraesCS5A01G327900.1	Wheat	cytosol	56.28	55.88
TraesCS5B01G327800.1	Wheat	cytosol, plastid	55.92	55.82
Os02t0139600-01	Rice	cytosol	35.7	55.52
TraesCS7B01G222700.1	Wheat	cytosol	31.33	54.78
HORVU5Hr1G083090.1	Barley	cytosol, plastid	54.46	54.56
HORVU6Hr1G022660.15	Barley	cytosol	36.07	49.5
HORVU7Hr1G011750.7	Barley	cytosol, mitochondrion, nucleus	34.79	48.23
GSMUA_Achr10P...	Banana	cytosol	12.57	47.26
HORVU4Hr1G090760.1	Barley	cytosol	33.88	46.15
TraesCS1A01G111100.1	Wheat	cytosol	41.17	42.56
HORVU1Hr1G024420.4	Barley	mitochondrion	31.15	39.22
CDY08000	Canola	cytosol	7.1	25.16
CDX88584	Canola	cytosol	22.22	23.06
CDY11908	Canola	plastid	23.13	22.09
CDY32766	Canola	cytosol	22.95	21.91
CDY32876	Canola	cytosol, extracellular	22.59	21.57
CDY42212	Canola	cytosol	22.22	21.48
CDY53991	Canola	cytosol	20.95	21.38
CDY50134	Canola	plastid	21.68	21.17
CDY35583	Canola	plastid	21.49	21.07
CDY58174	Canola	plastid	21.49	21.0
CDY42978	Canola	plastid	21.31	20.78
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	17.3	19.04
CDY38272	Canola	cytosol	16.03	18.49
CDX74047	Canola	cytosol	19.31	17.01
CDY28051	Canola	cytosol	19.49	16.9
CDY07998	Canola	cytosol	18.94	16.88
CDY35930	Canola	cytosol	19.31	16.72

Protein Annotations

MapMan:17.2.4	Gene3D:2.40.50.140	Gene3D:3.30.930.10	GO:A0A078BV60	InterPro:Asp-tRNA_synthase_2	InterPro:Asp/Asn-tRNA-synth_IIb
EnsemblPlants:CDX68726	ProteinID:CDX68726	ProteinID:CDX68726.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004812	GO:GO:0004815	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006422	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00130418001	InterPro:IPR006195	HAMAP:MF_02075	InterPro:NA-bd_OB-fold	PFAM:PF00152	PRINTS:PR01042
PFscan:PS50862	PANTHER:PTHR43450	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00458	UniParc:UPI0004EDD7B0
InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:

Description

BnaC01g07270D

Coordinates

chrLK031789:+:980714..983493

Molecular Weight (calculated)

61584.9 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.334

Length

549 amino acids

Sequence
(BLAST)

001: MSSEPEIQPP STETPDESGE KISKKAAKKE AAKLEKMRRR QEQEEAARKT ASLSLEDESS SRNYGDVTLT ELQSTADPKA GKWREAVEGK KWTNVSELVE
101: EIAGSEVLIR GRVHTNRPVS SKLGFVILRQ SGFTVQCVVT ESKEKNVSVN MVKFLKQLSG ESFVDVIGVV VLPKEPLTGT TQQVEIQVRK VYCVNSALQK
201: LPLNVEDAAR SEADIQAGKP GANQDTRLNN RVIDLRTPAN QAIFRIQCHV QIAFREFLLS KGFLEIHTPK LIAGSSEGGA AVFRLEYKGQ PACLAQSPQL
301: HKQMAICGDL ERVFEVGAVY RAEDSFTHRH LCEFIGLDVE MAIHKHYSEV MDIVGELFPF IFTKLEERCS KELEAIRKQY PFQPLKFLPK TLTIPFAEGI
401: QMLKEAGVEA DPLGDLNTEV ERKLGQLVLE KYNTEFYILH RYPSAVRPFY TMPCADDSNY SNSFDVFIRG EEIISGAQRV HDPELLKEQA IRFGIDVDTI
501: KTYIDSFRYG APPHGGFGVG LERVVMLFCG LNNIRKTSLF PRDPLRLAP

Best Arabidopsis Sequence Match ( AT4G31180.2 )
(BLAST)

001: MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD
101: LVEEMLESEV LIRGRVHTNR PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL TGTTQQVEIQ VRKVYCINKS
201: LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP
301: ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT
401: LRLTFEEGVQ MLKEAGVEVD PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE EIISGAQRVH IPEVLEQRAG
501: ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL NNIRKTSLFP RDPQRLSP

Arabidopsis Description

IBI1Aspartate--tRNA ligase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M084]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.