Factsheet for Solyc05g056250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 20363867
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P05380_001	Banana	cytosol	60.48	81.23
CDX73541	Canola	cytosol	30.88	80.38
VIT_04s0008g03010.t01	Wine grape	cytosol	78.12	78.12
KRH15638	Soybean	nucleus	76.65	76.8
KRH05378	Soybean	nucleus	75.74	75.74
Bra007014.1-P	Field mustard	cytosol	23.53	72.73
CDX78190	Canola	cytosol	23.53	72.73
AT4G31180.1	Thale cress	cytosol	70.4	68.64
Os02t0686400-01	Rice	extracellular	68.38	67.76
TraesCS5D01G165200.1	Wheat	cytosol, golgi	67.28	67.28
TraesCS5A01G160100.2	Wheat	cytosol	67.46	67.22
TraesCS5B01G157800.1	Wheat	cytosol	67.46	66.97
HORVU5Hr1G050160.1	Barley	cytosol	66.91	66.91
CDY28248	Canola	cytosol	67.46	66.85
CDX68726	Canola	extracellular	67.46	66.85
AT4G26870.1	Thale cress	cytosol	65.26	66.73
Bra011251.1-P	Field mustard	cytosol	67.28	66.67
Zm00001d008975_P002	Maize	cytosol	66.73	66.61
KXG31524	Sorghum	cytosol	66.73	66.36
Zm00001d015168_P001	Maize	extracellular, plasma membrane	66.54	66.3
CDY35247	Canola	cytosol	63.42	65.22
CDY13418	Canola	cytosol	65.44	64.49
Bra024018.1-P	Field mustard	cytosol	65.44	64.49
CDX72297	Canola	cytosol	65.07	63.9
OQU84347	Sorghum	cytosol	57.72	63.18
CDY14727	Canola	cytosol	62.32	63.13
HORVU7Hr1G107410.1	Barley	cytosol	62.5	63.08
Os02t0139600-01	Rice	cytosol	38.97	60.06
TraesCS5D01G333800.2	Wheat	cytosol	59.74	58.45
HORVU5Hr1G083090.1	Barley	cytosol, plastid	58.27	57.85
TraesCS5A01G327900.1	Wheat	cytosol	58.64	57.69
TraesCS5B01G327800.1	Wheat	cytosol, plastid	58.09	57.45
TraesCS7B01G222700.1	Wheat	cytosol	31.8	55.1
GSMUA_Achr10P...	Banana	cytosol	14.71	54.79
HORVU6Hr1G022660.15	Barley	cytosol	39.15	53.25
CDY06845	Canola	nucleus	49.45	53.06
HORVU7Hr1G011750.7	Barley	cytosol, mitochondrion, nucleus	38.42	52.78
HORVU4Hr1G090760.1	Barley	cytosol	37.32	50.37
TraesCS1A01G111100.1	Wheat	cytosol	43.01	44.07
HORVU1Hr1G024420.4	Barley	mitochondrion	31.99	39.91
Solyc03g019940.2.1	Tomato	plastid	21.88	20.84
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	21.51	20.17
Bra011081.1-P	Field mustard	cytosol	59.38	18.25
Solyc09g057950.2.1	Tomato	cytosol	18.75	16.75

Protein Annotations

MapMan:17.2.4	Gene3D:2.40.50.140	Gene3D:3.30.930.10	InterPro:Asp-tRNA_synthase_2	InterPro:Asp/Asn-tRNA-synth_IIb	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004815
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006422	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	UniProt:K4C2U9	HAMAP:MF_02075
InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862
PANTHER:PTHR43450	PANTHER:PTHR43450:SF1	SUPFAM:SSF50249	SUPFAM:SSF55681	EnsemblPlantsGene:Solyc05g056250.2	EnsemblPlants:Solyc05g056250.2.1
TIGRFAMs:TIGR00458	UniParc:UPI0002765702	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:65602533..65609056

Molecular Weight (calculated)

60952.3 Da

IEP (calculated)

6.442

GRAVY (calculated)

-0.307

Length

544 amino acids

Sequence
(BLAST)

001: MESEKPQNPS PMEPQEEGSN KISKKEAAKL ERQRRRQEAA AAAAATAVST VSIEESDPLS GNYGDVELND LQSKAVTGRK WTEVGSIAPE MKDRVVLVRG
101: RVQTIRPVGK KIAFVVVRER GFTVQCVLTV KPELVSSQMV KYATSLSKES IIDVEGVVTI PEKPITGATQ QQVEVQISKL YCVNRAVPTL PINIEDAARS
201: EVEIEQALEK GEQLVRVNQD TRLNFRILDM RTPANQGIFR IQCQIENIFR QFLLSEGFVG IHTPKLIGGS SEGGSAVFRL DYKGQPACLA QSPQLHKQMA
301: ICGDFGRVFE VGPVFRAEDS FTHRHLCEFT GLDVEMEIKE HYSEVMDIVD RLFVAMFDSL NEKCKKELEA VGKQYPFEPL KYLRKTLRLT FAEGIQMLKE
401: AGVEVDPLGD LNTESERKLG QLVAEKYGTE FYILHKYPQA VRPFYTMPCH DNPSYSNSFD VFIRGEEIIS GAQRVHVPEL LEKRAGECGI DVKTISTYID
501: SFRYGAPPHG GFGVGLERVV MLFCALNNIR KTSLFPRDPQ RIVP

Best Arabidopsis Sequence Match ( AT4G31180.2 )
(BLAST)

001: MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD
101: LVEEMLESEV LIRGRVHTNR PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL TGTTQQVEIQ VRKVYCINKS
201: LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP
301: ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT
401: LRLTFEEGVQ MLKEAGVEVD PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE EIISGAQRVH IPEVLEQRAG
501: ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL NNIRKTSLFP RDPQRLSP

Arabidopsis Description

IBI1Aspartate--tRNA ligase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M084]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.