Factsheet for Solyc03g019940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039341	Potato	mitochondrion, plastid	98.42	98.42
TraesCS2A01G231500.2	Wheat	cytosol	60.42	81.37
VIT_00s0229g00020.t01	Wine grape	plastid	80.03	78.25
Bra026243.1-P	Field mustard	plastid	75.31	76.38
CDY42978	Canola	plastid	74.96	76.02
Bra021059.1-P	Field mustard	plastid	74.43	75.62
CDY50134	Canola	plastid	74.08	75.27
Zm00001d021507_P002	Maize	plastid	72.33	75.23
CDY58174	Canola	plastid	73.91	75.09
TraesCS2D01G235900.1	Wheat	mitochondrion	69.53	74.91
Os07t0485400-01	Rice	cytosol	28.72	74.89
Zm00001d006377_P001	Maize	mitochondrion	71.98	74.86
KXG36232	Sorghum	mitochondrion	72.33	74.82
KRH04132	Soybean	plastid	71.63	74.36
TraesCS2B01G255900.2	Wheat	mitochondrion	69.7	74.25
CDY35583	Canola	plastid	72.68	74.11
KRH57405	Soybean	plastid	71.28	73.87
HORVU2Hr1G049240.1	Barley	mitochondrion	69.18	73.83
AT4G17300.2	Thale cress	cytosol, plastid	74.96	72.91
GSMUA_Achr2P18500_001	Banana	plasma membrane	75.83	52.23
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	45.01	44.31
Solyc09g057950.2.1	Tomato	cytosol	32.4	30.38
Solyc05g056250.2.1	Tomato	plastid	20.84	21.88

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	Gene3D:2.40.50.140	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0019538	GO:GO:0048481	InterPro:IPR006195
UniProt:K4BEW6	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336
PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR22594	PANTHER:PTHR22594:SF44	SUPFAM:SSF50249	SUPFAM:SSF55681
EnsemblPlantsGene:Solyc03g019940.2	EnsemblPlants:Solyc03g019940.2.1	TIGRFAMs:TIGR00457	UniParc:UPI00027688E4	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:61275151..61282464

Molecular Weight (calculated)

64178.1 Da

IEP (calculated)

5.969

GRAVY (calculated)

-0.330

Length

571 amino acids

Sequence
(BLAST)

001: MAGALSPATT LRLKPFYAVR FFSHYRRPIK VLNPNFYSSY PPQLPPAPYL SRRRSFCSVV SAAISSGEAV ERPKFENIEA KEGVKTEKVG EFRKRLRVAD
101: IKGGPEEGLD RLGETLVVRG WVRTVRAQSS VTFIDINDGS CLSNMQCVMG SDAEGYDQVE NGLISTGASV WIEGTVVSSQ GSKQKIELKV QKLVVVGKSD
201: PSFPIQKKRV SREFLRTKAH LRPRTNTFGA VSRVRNALSY ATHKFFQENG FVWVSSPIIT ASDCEGAGEQ FCVTTLIPNS NEGGDSPVSA IPTTESGSVD
301: WSQDFFGKRA YLTVSGQLNG ETYATALSDI YTFGPTFRAE NSNTSRHLAE FWMIEPELAF ADLDDDMACA TAYLQYVVQH VLENCKEDMD FFDTWIEKGI
401: INRLTDVVEK NFVQLSYTDA VELLLKAKKK FDFPVKWGCD LQSEHERYIT EEAFGGCPVI IRDYPKDIKA FYMRQNDDGK TVAAMDMLVP RVGELIGGSQ
501: REERLEYLEE RLDHMNLNKE SFWWYLDLRR YGSVPHAGFG LGFERLVQFA TGIDNIRDAI PFPRTPGSAE F

Best Arabidopsis Sequence Match ( AT4G17300.2 )
(BLAST)

001: MFQYEEEDSR NPKTVNDSIT MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF

Arabidopsis Description

NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.