Factsheet for PGSC0003DMT400039341

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g019940.2.1	Tomato	plastid	98.42	98.42
TraesCS2A01G231500.2	Wheat	cytosol	60.6	81.6
VIT_00s0229g00020.t01	Wine grape	plastid	79.68	77.91
Bra026243.1-P	Field mustard	plastid	74.78	75.84
CDY42978	Canola	plastid	74.61	75.67
Bra021059.1-P	Field mustard	plastid	74.26	75.44
Zm00001d021507_P002	Maize	plastid	72.15	75.05
CDY58174	Canola	plastid	73.73	74.91
CDY50134	Canola	plastid	73.73	74.91
Os07t0485400-01	Rice	cytosol	28.72	74.89
TraesCS2D01G235900.1	Wheat	mitochondrion	69.35	74.72
Zm00001d006377_P001	Maize	mitochondrion	71.8	74.68
KXG36232	Sorghum	mitochondrion	72.15	74.64
KRH04132	Soybean	plastid	71.45	74.18
TraesCS2B01G255900.2	Wheat	mitochondrion	69.53	74.07
CDY35583	Canola	plastid	72.33	73.75
KRH57405	Soybean	plastid	71.1	73.68
HORVU2Hr1G049240.1	Barley	mitochondrion	69.0	73.64
AT4G17300.2	Thale cress	cytosol, plastid	74.61	72.57
GSMUA_Achr2P18500_001	Banana	plasma membrane	75.66	52.11
PGSC0003DMT400060831	Potato	cytosol, extracellular	45.36	44.66
PGSC0003DMT400056710	Potato	cytosol	32.75	30.81

Protein Annotations

KEGG:00970+6.1.1.22	EntrezGene:102578894	MapMan:17.2.3	Gene3D:2.40.50.140	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812
GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0019538	GO:GO:0048481
InterPro:IPR006195	UniProt:M1B859	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152
PFAM:PF01336	EnsemblPlantsGene:PGSC0003DMG400015215	PGSC:PGSC0003DMG400015215	EnsemblPlants:PGSC0003DMT400039341	PRINTS:PR01042	PFscan:PS50862
PANTHER:PTHR22594	PANTHER:PTHR22594:SF44	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0002950586
RefSeq:XP_006351539.1	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:	:

Description

Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400015215]

Coordinates

chr3:-:50185444..50193060

Molecular Weight (calculated)

64394.3 Da

IEP (calculated)

6.016

GRAVY (calculated)

-0.346

Length

571 amino acids

Sequence
(BLAST)

001: MAGALSPATT LRLKPFYAVR FFTHYRRPIK VLNPNFYSSY PPKLHPTPYL SRRRSFCSVV SAAISSGEAV ERPKFENIET KEGVKTEQVR EFRKRLRVAD
101: IKGGPEEGLD RLGETLVVRG WVRTVRAQSS VTFIDINDGS CLSNMQCVMG SDAEGYDQVE NGLISTGASV WIEGTVVSSQ GSKQKIELKV QKLVVVGKSD
201: PSFPIQKKRV SREFLRTKAH LRPRTNTFGA VSRVRNALSY ATHKFFQENG FVWVSSPIIT ASDCEGAGEQ FCVTTLIPNS NEGGDSPVSA IPTTESGSVD
301: WSQDFFGKRA YLTVSGQLNG ETYATALSDI YTFGPTFRAE NSNTSRHLAE FWMIEPELAF ADLDDDMACA TAYLQYVVQY VLENCKEDMD FFDTWIEKGI
401: INRLTDVVEK NFVQLSYTDA VELLLKAKKK FDFPVKWGCD LQSEHERYIT EEAFGGCPVI IRDYPKDIKA FYMRQNDDGK TVAAMDMLVP RVGELIGGSQ
501: REERLEYLEE RLDNMNLNKE SFWWYLDLRR YGSVPHAGFG LGFERLVQFA TGIDNIRDAI PFPRTPGSAE F

Best Arabidopsis Sequence Match ( AT4G17300.2 )
(BLAST)

001: MFQYEEEDSR NPKTVNDSIT MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF

Arabidopsis Description

NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.