CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42978	Canola	plastid	93.93	93.43
Bra026243.1-P	Field mustard	plastid	93.39	92.9
CDY50134	Canola	plastid	89.29	88.97
CDY58174	Canola	plastid	88.75	88.43
AT4G17300.2	Thale cress	cytosol, plastid	87.68	83.65
TraesCS2A01G231500.2	Wheat	cytosol	59.46	78.54
VIT_00s0229g00020.t01	Wine grape	plastid	77.14	73.97
KRH57405	Soybean	plastid	72.5	73.68
KRH04132	Soybean	plastid	72.32	73.64
Os07t0485400-01	Rice	cytosol	28.57	73.06
Solyc03g019940.2.1	Tomato	plastid	74.11	72.68
PGSC0003DMT400039341	Potato	mitochondrion, plastid	73.75	72.33
Zm00001d006377_P001	Maize	mitochondrion	70.89	72.31
KXG36232	Sorghum	mitochondrion	71.25	72.28
TraesCS2D01G235900.1	Wheat	mitochondrion	68.21	72.08
Zm00001d021507_P002	Maize	plastid	70.54	71.95
TraesCS2B01G255900.2	Wheat	mitochondrion	68.21	71.27
HORVU2Hr1G049240.1	Barley	mitochondrion	67.68	70.84
CDX88584	Canola	cytosol	46.79	49.53
CDY08000	Canola	cytosol	13.57	49.03
GSMUA_Achr2P18500_001	Banana	plasma membrane	71.43	48.25
CDY11908	Canola	plastid	48.57	47.3
CDY32766	Canola	cytosol	47.68	46.43
CDY32876	Canola	cytosol, extracellular	47.5	46.26
CDY53991	Canola	cytosol	42.86	44.61
CDY42212	Canola	cytosol	44.64	44.01
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	33.93	38.08
CDY38272	Canola	cytosol	29.64	34.87
CDY28051	Canola	cytosol	35.71	31.6
CDY35930	Canola	cytosol	35.71	31.55
CDY07998	Canola	cytosol	34.46	31.33
CDX74047	Canola	cytosol	34.11	30.66
CDX73541	Canola	cytosol	8.57	22.97
CDY35247	Canola	cytosol	20.36	21.55
CDX68726	Canola	extracellular	21.07	21.49
CDY28248	Canola	cytosol	20.89	21.31
CDY13418	Canola	cytosol	20.89	21.2
CDX72297	Canola	cytosol	20.89	21.12
CDY14727	Canola	cytosol	19.82	20.67
CDY06845	Canola	nucleus	15.18	16.77
CDX78190	Canola	cytosol	4.11	13.07

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	Gene3D:2.40.50.140	GO:A0A078HFK0	UniProt:A0A078HFK0	InterPro:Asn-tRNA-ligase
InterPro:Asp/Asn-tRNA-synth_IIb	EnsemblPlants:CDY35583	ProteinID:CDY35583	ProteinID:CDY35583.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00058930001	InterPro:IPR006195	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA
PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR22594	PANTHER:PTHR22594:SF44
SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0004EB4F89	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

BnaC01g21050DBnaC01g21050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFK0]

Coordinates

chrLK032356:-:14870..17727

Molecular Weight (calculated)

62577.1 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.281

Length

560 amino acids

Sequence
(BLAST)

001: MPAASLRLAS FSTLRFLSFF PISNPSPYSL FRHRRRLLFE DSAANARRRC FCTGTSVSAS SSDGKNNQGN RIGSKVGEFR RKLRVAEVKG GADEGLGRVG
101: QSLSVMGWVR TLRSQSSVTF IEINDGSCLS NLQCVMNPDA EGYDQVEAGS VLTGASVSVQ GTIVASQGTK QKVELKVHKI ILVGKCDSSY PIQKKRVSRE
201: FLRTKAHLRP RTNSFGAVAR VRNTLAYATH KFFQESGFVW VASPIITASD CEGAGEQFCV TILIPSSHET TDSPIDAIPK TKGGLVDWSQ DFFGKPAFLT
301: VSGQLNGETY ATALSDIYTF GPTFRAENSN TSRHLAEFWM LEPELAFADL DDDMACATAY LSSTSYVKYV LDNCKEDMEF FDTWIEKGIT HRLSDVVEKE
401: FLQLSYTDAI ELLLKANKEF EFPVKWGLDL QSEHERYITE EAFEGRPVII RDYPKEIKAF YMRENDDGKT VAAMDMLVPR VGELIGGSQR EERLEVLEAR
501: LDGLKLDKES YWWYLDLRRY GSVPHAGFGL GFERLVQFAT GIDNIRDVIP FPRSPGSADF

Best Arabidopsis Sequence Match ( AT4G17300.1 )
(BLAST)

001: MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR FGSKVGEFRK KLRIAEVKGG
101: ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ KVELKVEKII VVGECDSSYP
201: IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT DTSIDAIPKT KGGLIDWSQD
301: FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN CKEDMEFFDT WIEKGIIRRL
401: SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA MDMLVPRIGE LIGGSQREER
501: LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF

Arabidopsis Description

NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.